CTC-487M23.8

General Information

Gene Name : CTC-487M23.8
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTC-487M23.8)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTC-487M23.8 is not avaliable on ENCORE database.

Proteins bound to RNA

CTC-487M23.8 RNA is bound by 9 proteins.

eCLIP assay for CTC-487M23.8 is not avaliable on ENCORE database.

9 proteins are bound to CTC-487M23.8 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	112197017	112197111	+	5'-UTR,CDS,intron-Distal	5.16173	4.38825	K562	DROSHA
chr5	112197054	112197119	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.04889	6.89039	K562	RBM15
chr5	112197016	112197064	+	5'-UTR,intron-Distal	5.10024	6.15796	HepG2	DDX3X
chr5	112197011	112197073	+	5'-UTR,intron-Distal	4.65203	21.03966	K562	DDX3X
chr5	112198246	112198380	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.79620	6.08664	K562	BUD13
chr5	112197101	112197174	+	CDS,intron-Distal,intron-Proximal	5.09325	5.68502	HepG2	PRPF8
chr5	112198232	112198380	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.74618	6.32052	K562	AQR
chr5	112197073	112197115	+	CDS,intron-Distal,intron-Proximal	4.87399	19.42045	K562	DDX3X
chr5	112198215	112198278	+	3'-UTR,CDS,intron-Distal	3.00587	3.06971	K562	YBX3
chr5	112198204	112198269	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.28520	7.35825	K562	DDX3X
chr5	112203294	112203403	+	3'-UTR,intron-Distal	5.51947	9.50640	K562	RBM15
chr5	112203493	112203559	+	3'-UTR,intron-Distal	4.92125	36.05793	K562	PABPC4
chr5	112203053	112203117	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.56661	4.79708	HepG2	U2AF2
chr5	112198280	112198337	+	intron-Distal,intron-Proximal	3.87954	4.75655	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTC-487M23.8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTC-487M23.8 is not available on ENCORE database.
22 RBPs can affect the levels of CTC-487M23.8.

The Knockdown/knockout RNA-Seq assay for CTC-487M23.8 is not available on ENCORE database.

22 RBPs can affect the gene expression of CTC-487M23.8 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTC-487M23.8	ENSG00000272869.1	1.32890	18.42020	-3.79300	3.32230	2.33930	HepG2	BCLAF1
CTC-487M23.8	ENSG00000272869.1	30.20100	4.14830	2.86390	4.41010	3.07880	HepG2	EIF3G
CTC-487M23.8	ENSG00000272869.1	31.70380	10.55800	1.58620	2.13620	1.51750	HepG2	HNRNPK
CTC-487M23.8	ENSG00000272869.1	35.36620	10.61090	1.73670	1.90190	1.33180	HepG2	IGF2BP2
CTC-487M23.8	ENSG00000272869.1	30.42830	11.25030	1.43540	1.91480	1.36360	HepG2	MAGOH
CTC-487M23.8	ENSG00000272869.1	49.75720	21.90580	1.18350	2.40440	1.43390	HepG2	PCBP2
CTC-487M23.8	ENSG00000272869.1	36.74370	16.19390	1.18190	1.84230	1.33080	HepG2	RPS19
CTC-487M23.8	ENSG00000272869.1	85.60340	40.67280	1.07350	2.95200	2.30420	HepG2	U2AF1
CTC-487M23.8	ENSG00000272869.1	238.50990	104.41860	1.19160	9.83150	8.69210	K562	DDX47
CTC-487M23.8	ENSG00000272869.1	77.94020	28.82880	1.43480	2.26690	1.70990	K562	FXR1
CTC-487M23.8	ENSG00000272869.1	76.54270	36.92440	1.05160	2.66590	1.45860	K562	HNRNPK
CTC-487M23.8	ENSG00000272869.1	146.10870	94.35760	0.63070	2.29240	1.34150	K562	HNRNPL
CTC-487M23.8	ENSG00000272869.1	182.22200	103.84130	0.81120	3.56770	2.66760	K562	HSPD1
CTC-487M23.8	ENSG00000272869.1	76.94680	38.85750	0.98560	2.90870	2.04650	K562	MAGOH
CTC-487M23.8	ENSG00000272869.1	70.97680	119.86700	-0.75600	2.54190	1.67620	K562	MBNL1
CTC-487M23.8	ENSG00000272869.1	139.14890	82.60870	0.75220	2.77120	1.32990	K562	PNPT1
CTC-487M23.8	ENSG00000272869.1	71.93340	29.92550	1.26520	3.29930	2.47850	K562	PRPF8
CTC-487M23.8	ENSG00000272869.1	263.29540	87.71570	1.58570	11.74730	10.05780	K562	PUF60
CTC-487M23.8	ENSG00000272869.1	66.80650	36.19490	0.88410	2.16060	1.42270	K562	RBM22
CTC-487M23.8	ENSG00000272869.1	86.91600	30.50720	1.51040	4.98960	3.89070	K562	RPS19
CTC-487M23.8	ENSG00000272869.1	74.85760	30.62450	1.28940	3.42050	1.93250	K562	RRP9
CTC-487M23.8	ENSG00000272869.1	68.47560	29.01860	1.23850	3.27070	2.16050	K562	SUPV3L1
CTC-487M23.8	ENSG00000272869.1	6.80980	24.41420	-1.84200	2.19570	1.48000	K562	U2AF2
CTC-487M23.8	ENSG00000272869.1	135.31250	71.83900	0.91340	4.13390	3.11420	K562	WDR43
CTC-487M23.8	ENSG00000272869.1	64.92590	31.21650	1.05640	2.69910	1.51140	K562	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTC-487M23.8 is not available on ENCORE database.

5 RBPs can affect the splicing of CTC-487M23.8 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTC-487M23.8	ENSG00000272869.1	chr5	+	112200153	112200225			112198204	112198280	112200317	112200429	-0.09300	0.00154	0.03188	excluded	K562	U2AF1
MXE	CTC-487M23.8	ENSG00000272869.1	chr5	+	112198204	112198280	112200153	112200225	112197001	112197114	112200317	112200429	-0.11400	0.00537	0.07332	2included	K562	PUS1
MXE	CTC-487M23.8	ENSG00000272869.1	chr5	+	112198204	112198280	112200153	112200225	112197001	112197114	112200317	112200429	-0.16400	0.00028	0.00581	2included	K562	U2AF2
MXE	CTC-487M23.8	ENSG00000272869.1	chr5	+	112198204	112198280	112200153	112200225	112197001	112197114	112200317	112200429	-0.12500	0.00070	0.02457	2included	K562	PPIL4
MXE	CTC-487M23.8	ENSG00000272869.1	chr5	+	112198204	112198280	112200153	112200225	112197001	112197114	112200317	112200429	0.17300	0.00069	0.05222	1included	K562	SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTC-487M23.8

General Information

Functions

Localization

Domains (AlphaFold: CTC-487M23.8)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTC-487M23.8 is not avaliable on ENCORE database.

9 proteins are bound to CTC-487M23.8 RNA:

eCLIP assay for CTC-487M23.8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTC-487M23.8 is not available on ENCORE database.

22 RBPs can affect the gene expression of CTC-487M23.8 :

The Knockdown/knockout RNA-Seq assay for CTC-487M23.8 is not available on ENCORE database.

5 RBPs can affect the splicing of CTC-487M23.8 :

The Knockdown/knockout RNA-Seq assay for CTC-487M23.8 is not avaliable on ENCORE database.