AP000304.12

General Information

Gene Name : AP000304.12
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AP000304.12)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AP000304.12 is not avaliable on ENCORE database.

Proteins bound to RNA

AP000304.12 RNA is bound by 28 proteins.

eCLIP assay for AP000304.12 is not avaliable on ENCORE database.

28 proteins are bound to AP000304.12 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	35279649	35279739	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.89479	7.44314	HepG2	LARP4
chr21	35284592	35284632	-	CDS,intron-Distal,intron-Proximal	4.25034	8.35382	K562	RPS3
chr21	35284593	35284635	-	CDS,intron-Distal,intron-Proximal	3.33970	3.55700	HepG2	LARP4
chr21	35281486	35281516	-	CDS,intron-Distal,intron-Proximal	3.37619	7.16362	HepG2	SUB1
chr21	35284632	35284704	-	CDS,intron-Distal,intron-Proximal	3.50523	11.50994	K562	RPS3
chr21	35281390	35281460	-	CDS,intron-Distal,intron-Proximal	3.75716	4.22242	HepG2	G3BP1
chr21	35284632	35284704	-	CDS,intron-Distal,intron-Proximal	3.12919	61.17472	K562	DDX3X
chr21	35279666	35279714	-	3'-UTR,CDS,intron-Distal	3.13703	10.53279	HepG2	SUB1
chr21	34958451	34958485	-	CDS,intron-Distal,intron-Proximal	3.89585	6.34541	K562	BUD13
chr21	35281387	35281486	-	CDS,intron-Distal,intron-Proximal	3.53553	24.80499	HepG2	SUB1
chr21	35284592	35284628	-	CDS,intron-Distal,intron-Proximal	4.97248	7.12026	HepG2	G3BP1
chr21	34958282	34958382	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.19385	4.46921	K562	RBM15
chr21	35279643	35279753	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.18668	10.25987	K562	RPS3
chr21	35284628	35284703	-	CDS,intron-Distal,intron-Proximal	3.20290	4.70577	HepG2	G3BP1
chr21	35281460	35281515	-	CDS,intron-Distal,intron-Proximal	4.19448	7.50821	HepG2	G3BP1
chr21	35279642	35279752	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.52411	6.11586	HepG2	G3BP1
chr21	35284592	35284621	-	CDS,intron-Distal,intron-Proximal	3.20141	4.58085	K562	LIN28B
chr21	35284612	35284707	-	CDS,intron-Distal,intron-Proximal	3.07882	6.65465	K562	DROSHA
chr21	35281395	35281523	-	CDS,intron-Distal,intron-Proximal	3.78528	6.61983	HepG2	RPS3
chr21	34957073	34957130	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.94556	5.26064	K562	AQR
chr21	35276257	35276324	-	3'-UTR,CDS,intron-Distal	4.36061	8.59403	HepG2	LARP4
chr21	34994278	34994367	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.31065	5.00483	K562	GPKOW
chr21	35275799	35275898	-	3'-UTR,CDS,intron-Distal	3.42244	5.91086	HepG2	LIN28B
chr21	34994301	34994380	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.95778	4.46864	HepG2	BCLAF1
chr21	35279599	35279631	-	intron-Distal,intron-Proximal	4.73911	4.48002	K562	AQR
chr21	34960842	34960986	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.71046	6.05689	K562	GEMIN5
chr21	34975707	34975746	-	CDS,intron-Distal,intron-Proximal	3.25556	3.31745	K562	ZNF622
chr21	34967799	34967921	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.53351	6.28735	K562	DDX24
chr21	35275897	35275947	-	3'-UTR,CDS,intron-Distal	3.93006	8.51307	K562	ZC3H11A
chr21	34985885	34985914	-	CDS,intron-Distal,intron-Proximal	3.85782	7.89918	K562	DDX24
chr21	35275774	35275841	-	3'-UTR,CDS,intron-Distal	4.39308	77.39214	K562	PABPC4
chr21	34968040	34968131	-	3'-UTR,CDS,intron-Distal	3.90021	6.26935	K562	DDX24
chr21	35275840	35275943	-	3'-UTR,CDS,intron-Distal	3.72149	30.02943	HepG2	SUB1
chr21	34994341	34994387	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.04745	3.13705	K562	BUD13
chr21	35284494	35284559	-	intron-Distal,intron-Proximal	3.70056	6.43995	K562	PRPF8
chr21	34974615	34974652	-	CDS,intron-Distal,intron-Proximal	5.03173	4.75872	K562	DDX24
chr21	34989010	34989057	-	CDS,intron-Distal,intron-Proximal	4.13731	6.47664	K562	ZNF622
chr21	34971463	34971534	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.67059	7.13692	K562	ZNF622
chr21	34960838	34960994	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.55550	3.42371	HepG2	DDX3X
chr21	35275789	35275845	-	3'-UTR,CDS,intron-Distal	5.07654	12.40931	K562	ZC3H11A
chr21	35276239	35276302	-	3'-UTR,CDS,intron-Distal	4.07193	3.55598	HepG2	ZC3H11A
chr21	34985843	34985914	-	CDS,intron-Distal,intron-Proximal	3.28992	7.33138	HepG2	BCLAF1
chr21	35275920	35275943	-	3'-UTR,CDS,intron-Distal	4.34574	4.60160	HepG2	LARP4
chr21	35275788	35275840	-	3'-UTR,CDS,intron-Distal	3.62768	8.24811	HepG2	SUB1
chr21	34960837	34960993	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.76046	5.97131	K562	DDX3X
chr21	34996983	34997062	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.76875	6.97987	K562	ZNF622
chr21	34968038	34968141	-	3'-UTR,CDS,intron-Distal	3.36946	5.89932	K562	ZNF622
chr21	35279466	35279510	-	intron-Distal	4.34743	3.85435	K562	PRPF8
chr21	35275792	35275846	-	3'-UTR,CDS,intron-Distal	4.04475	12.76766	HepG2	LARP4
chr21	35275984	35276095	-	intron-Distal	3.47003	4.52210	K562	KHSRP
chr21	35106555	35106594	-	intron-Distal	5.88875	5.12752	HepG2	SF3A3
chr21	35281290	35281359	-	intron-Distal,intron-Proximal	3.33752	5.03897	K562	PRPF8
chr21	34989011	34989048	-	CDS,intron-Distal,intron-Proximal	4.24457	7.95258	K562	DDX24
chr21	35003789	35003864	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.58784	6.87242	K562	DDX24
chr21	34985843	34985914	-	CDS,intron-Distal,intron-Proximal	3.81488	7.90527	K562	ZNF622
chr21	35275788	35275819	-	3'-UTR,intron-Distal	5.90849	5.98137	K562	RPS3
chr21	34967621	34967706	-	3'-UTR,intron-Distal,intron-Proximal	3.05087	3.40713	K562	HNRNPL
chr21	34975787	34975844	-	CDS,intron-Distal,intron-Proximal	6.40021	11.35548	K562	DDX24
chr21	34971448	34971576	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.99134	5.65086	HepG2	BCLAF1
chr21	35276263	35276293	-	3'-UTR,CDS,intron-Distal	3.14827	4.21069	K562	RPS3
chr21	34985830	34985912	-	CDS,intron-Distal,intron-Proximal	3.68645	4.80912	HepG2	PPIG
chr21	35275800	35275896	-	3'-UTR,CDS,intron-Distal	3.87663	4.72530	HepG2	G3BP1
chr21	34958508	34958570	-	intron-Distal,intron-Proximal	3.91071	3.24603	K562	KHSRP
chr21	35276293	35276325	-	3'-UTR,CDS,intron-Distal	3.58444	5.61320	K562	RPS3
chr21	35275900	35275943	-	3'-UTR,CDS,intron-Distal	4.19201	7.23394	K562	RPS3
chr21	34994294	34994346	-	CDS,intron-Distal,intron-Proximal	4.22848	6.81381	K562	DDX24
chr21	34975708	34975787	-	CDS,intron-Distal,intron-Proximal	5.03173	7.50842	K562	DDX24
chr21	34960866	34961030	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.18329	3.64037	HepG2	NCBP2
chr21	34994299	34994324	-	CDS,intron-Distal,intron-Proximal	3.33362	3.02345	K562	ZNF622
chr21	35275819	35275876	-	3'-UTR,CDS,intron-Distal	4.27332	10.58757	K562	RPS3
chr21	34964216	34964266	-	intron-Distal	3.40286	4.97292	HepG2	ILF3
chr21	35275838	35275910	-	3'-UTR,CDS,intron-Distal	4.57497	3.63055	K562	ZNF800
chr21	35281312	35281376	-	intron-Distal,intron-Proximal	4.60331	9.04436	K562	AQR
chr21	35276238	35276327	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.45294	7.81943	HepG2	G3BP1
chr21	34974538	34974656	-	CDS,intron-Distal,intron-Proximal	3.64717	3.22245	K562	GRWD1
chr21	34985837	34985885	-	CDS,intron-Distal,intron-Proximal	5.32421	13.69276	K562	DDX24
chr21	34969658	34969704	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.17081	3.17151	K562	UCHL5
chr21	34996988	34997069	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.22848	15.36057	K562	DDX24
chr21	34974537	34974599	-	CDS,intron-Distal,intron-Proximal	3.90553	4.50825	K562	DDX24
chr21	35275893	35275945	-	3'-UTR,CDS,intron-Distal	3.73830	11.36169	K562	LIN28B
chr21	35284639	35284710	-	CDS,intron-Distal,intron-Proximal	3.50783	10.86322	K562	GEMIN5
chr21	35275796	35275831	-	3'-UTR,intron-Distal	4.53616	7.08557	K562	LIN28B
chr21	34996980	34997064	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.75040	5.15776	HepG2	BCLAF1
chr21	34994298	34994360	-	CDS,intron-Distal,intron-Proximal	4.65288	5.87202	K562	UCHL5
chr21	34989011	34989061	-	CDS,intron-Distal,intron-Proximal	4.52688	3.71570	HepG2	BCLAF1
chr21	35275851	35275942	-	3'-UTR,CDS,intron-Distal	3.72213	7.00363	HepG2	ZC3H11A
chr21	35284716	35284771	-	intron-Distal,intron-Proximal	4.24788	4.36029	K562	GPKOW
chr21	35275867	35275893	-	3'-UTR,CDS,intron-Distal	4.66396	13.66922	K562	LIN28B
chr21	35284643	35284704	-	CDS,intron-Distal,intron-Proximal	4.06246	10.75904	HepG2	SUB1
chr21	34967648	34967696	-	3'-UTR,intron-Distal,intron-Proximal	3.78077	4.66686	K562	DDX24
chr21	34994353	34994375	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.28580	3.11409	K562	DDX24
chr21	35276238	35276257	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.34574	4.61933	HepG2	LARP4
chr21	35275868	35275919	-	3'-UTR,CDS,intron-Distal	4.12956	11.93232	HepG2	LARP4
chr21	35284667	35284747	-	CDS,intron-Distal,intron-Proximal	4.37015	10.30697	K562	AQR
chr21	34996993	34997051	-	5'-UTR,CDS,intron-Distal	3.48523	3.64266	HepG2	PPIG
chr21	35275784	35275851	-	3'-UTR,CDS,intron-Distal	3.14879	5.00685	HepG2	ZC3H11A
chr21	35275831	35275867	-	3'-UTR,CDS,intron-Distal	4.89575	14.97060	K562	LIN28B
chr21	35275777	35275871	-	3'-UTR,CDS,intron-Distal	5.24326	16.34217	K562	APOBEC3C
chr21	34975710	34975776	-	CDS,intron-Distal,intron-Proximal	3.67666	3.87469	HepG2	BCLAF1
chr21	34969579	34969699	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.84052	11.24043	K562	ZNF622
chr21	34994352	34994375	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.46308	3.36945	K562	ZNF622
chr21	35275845	35275897	-	3'-UTR,CDS,intron-Distal	4.92213	15.71039	K562	ZC3H11A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for AP000304.12 is not avaliable on ENCORE database.

Summary
AS Affected by

Diffrential Expression

The Knockdown/knockout assay for AP000304.12 is not available on ENCORE database.
No RBPs affect the gene expression of AP000304.12 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for AP000304.12 is not available on ENCORE database.

No RBPs affect the gene expression of AP000304.12 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for AP000304.12 is not available on ENCORE database.

1 RBPs can affect the splicing of AP000304.12 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A3SS	AP000304.12	ENSG00000249209.1	chr21	-	34956992	34957230			34956992	34957142	34958283	34958487	-0.68300	0.00691	0.03835	shorter	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AP000304.12

General Information

Functions

Localization

Domains (AlphaFold: AP000304.12)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AP000304.12 is not avaliable on ENCORE database.

28 proteins are bound to AP000304.12 RNA:

eCLIP assay for AP000304.12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AP000304.12 is not available on ENCORE database.

No RBPs affect the gene expression of AP000304.12 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for AP000304.12 is not available on ENCORE database.

1 RBPs can affect the splicing of AP000304.12 :

The Knockdown/knockout RNA-Seq assay for AP000304.12 is not avaliable on ENCORE database.