AC002539.1

General Information

Gene Name : AC002539.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AC002539.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AC002539.1 is not avaliable on ENCORE database.

Proteins bound to RNA

AC002539.1 RNA is bound by 17 proteins.

eCLIP assay for AC002539.1 is not avaliable on ENCORE database.

17 proteins are bound to AC002539.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	68024669	68024764	-	intron-Distal	4.88388	8.58690	K562	SAFB2
chr17	68034024	68034049	-	intron-Distal	3.32502	4.56724	K562	KHSRP
chr17	68083351	68083437	-	intron-Distal	3.86744	4.59821	K562	ILF3
chr17	68097945	68097989	-	intron-Distal	4.08243	3.39089	K562	KHDRBS1
chr17	68042297	68042351	-	intron-Distal	4.35338	5.56749	K562	KHDRBS1
chr17	68021152	68021191	-	intron-Distal	4.16518	4.95197	K562	SAFB2
chr17	68106843	68106941	-	intron-Distal	3.20839	6.85981	K562	SAFB2
chr17	68023705	68023769	-	intron-Distal	3.77638	7.22515	K562	SAFB2
chr17	68073371	68073513	-	intron-Distal	3.97133	5.06208	K562	MATR3
chr17	68105820	68105931	-	intron-Distal	4.23767	3.33309	K562	SAFB
chr17	68024471	68024544	-	intron-Distal	3.66804	5.49916	K562	SAFB2
chr17	68050227	68050301	-	intron-Distal	4.13498	3.22483	K562	SAFB2
chr17	68106541	68106650	-	intron-Distal	5.22965	39.94322	K562	TARDBP
chr17	68026748	68026833	-	intron-Distal	4.23861	4.36289	K562	PPIL4
chr17	68066362	68066455	-	intron-Distal	3.95241	14.54671	K562	PTBP1
chr17	68072825	68072924	-	intron-Distal	3.07096	5.93547	K562	QKI
chr17	68056304	68056370	-	intron-Distal	4.57482	6.64835	K562	QKI
chr17	68023128	68023183	-	intron-Distal	3.93044	3.19638	K562	SAFB2
chr17	68088592	68088665	-	intron-Distal	5.28986	10.59221	K562	PTBP1
chr17	68025511	68025567	-	intron-Distal	3.25404	5.74046	K562	SAFB2
chr17	68117087	68117166	-	intron-Distal	3.63484	3.98203	K562	MATR3
chr17	68029451	68029639	-	intron-Distal	3.38871	10.04791	K562	SAFB2
chr17	68097067	68097134	-	intron-Distal	3.05577	4.67421	K562	KHDRBS1
chr17	68113073	68113168	-	intron-Distal	3.69794	5.39069	K562	TARDBP
chr17	68073380	68073499	-	intron-Distal	3.60210	9.60000	K562	PTBP1
chr17	68104786	68104856	-	intron-Distal	4.47743	5.16344	K562	SAFB2
chr17	68018304	68018364	-	intron-Distal,intron-Proximal	4.06998	5.84654	K562	U2AF1
chr17	68034529	68034609	-	intron-Distal	4.76403	7.66316	K562	KHSRP
chr17	68087671	68087760	-	intron-Distal	4.16588	12.26942	K562	TARDBP
chr17	68077929	68078000	-	intron-Distal	3.31809	12.32433	K562	HNRNPL
chr17	68064544	68064702	-	intron-Distal	4.36012	29.67871	K562	HNRNPL
chr17	68111557	68111649	-	intron-Distal	4.13855	3.25538	K562	KHSRP
chr17	68116712	68116787	-	intron-Distal	3.20922	7.05032	K562	PTBP1
chr17	68013584	68013676	-	intron-Distal	5.22217	20.20053	K562	TARDBP
chr17	68121008	68121072	-	intron-Distal	3.27216	14.76422	K562	HNRNPL
chr17	68026939	68026987	-	intron-Distal	3.10967	3.34630	K562	SAFB2
chr17	68028308	68028375	-	intron-Distal	3.52183	4.28912	K562	SAFB2
chr17	68052047	68052178	-	intron-Distal	4.35312	5.31654	K562	HNRNPL
chr17	68109760	68109801	-	intron-Distal	6.17348	27.96705	K562	LIN28B
chr17	68018298	68018353	-	intron-Distal,intron-Proximal	3.08636	4.93484	K562	U2AF2
chr17	68024881	68024966	-	intron-Distal	3.85275	6.79783	K562	SAFB2
chr17	68028850	68028901	-	intron-Distal	3.89524	3.19638	K562	SAFB2
chr17	68026442	68026506	-	intron-Distal	3.54815	7.80148	K562	SAFB2
chr17	68088688	68088761	-	intron-Distal	3.91382	5.16181	K562	PTBP1
chr17	68112834	68112883	-	intron-Distal	4.14424	7.90970	K562	KHSRP
chr17	68027021	68027124	-	intron-Distal	5.65073	16.12866	K562	SAFB2
chr17	68039060	68039130	-	intron-Distal	4.33032	6.85458	K562	PTBP1
chr17	68117096	68117200	-	intron-Distal	4.21138	6.90820	K562	HNRNPK
chr17	68112749	68112772	-	intron-Distal	3.35695	8.33567	K562	KHSRP
chr17	68064074	68064161	-	intron-Distal	4.46277	4.88815	K562	KHDRBS1
chr17	68106494	68106616	-	intron-Distal	3.81190	4.73413	K562	SAFB
chr17	68063559	68063638	-	intron-Distal	3.70135	8.52228	K562	HNRNPL
chr17	68105516	68105578	-	intron-Distal	3.05646	3.75092	K562	SAFB2
chr17	68068315	68068429	-	intron-Distal	7.88356	46.10718	K562	QKI
chr17	68059584	68059665	-	intron-Distal	3.81072	3.22483	K562	SAFB2
chr17	68084281	68084395	-	intron-Distal	4.19121	4.84851	K562	ILF3
chr17	68025518	68025597	-	intron-Distal	4.22251	5.23912	K562	PPIL4
chr17	68034436	68034526	-	intron-Distal	3.78934	6.62503	K562	KHSRP
chr17	68103511	68103565	-	intron-Distal	3.40990	5.96294	K562	TIA1
chr17	68039173	68039264	-	intron-Distal	3.28995	3.42334	K562	KHDRBS1
chr17	68106849	68106938	-	intron-Distal	3.55537	4.56345	K562	SAFB
chr17	68026771	68026854	-	intron-Distal	3.19737	7.37958	K562	SAFB2
chr17	68025896	68025945	-	intron-Distal	3.11275	3.75707	K562	SAFB2
chr17	68097999	68098053	-	intron-Distal	5.27430	8.77040	K562	KHDRBS1
chr17	68021246	68021314	-	intron-Distal	3.46871	5.15509	K562	SAFB2
chr17	68082797	68082886	-	intron-Distal	3.22931	3.75642	K562	ILF3
chr17	68032817	68032905	-	intron-Distal	4.54120	6.81663	K562	KHDRBS1
chr17	68098165	68098231	-	intron-Distal	3.80266	6.07515	K562	QKI
chr17	68022455	68022489	-	intron-Distal	3.92779	3.74251	K562	SAFB2
chr17	68077840	68077929	-	intron-Distal	3.18443	9.99909	K562	HNRNPL
chr17	68082581	68082641	-	intron-Distal	3.71860	4.09735	K562	ILF3
chr17	68116847	68116951	-	intron-Distal	3.68578	4.78995	K562	MATR3
chr17	68021846	68021909	-	intron-Distal	3.53022	5.32588	K562	SAFB2
chr17	68083458	68083545	-	intron-Distal	4.91696	6.66835	K562	ILF3
chr17	68079504	68079591	-	intron-Distal	3.22235	4.87195	K562	HNRNPL
chr17	68109719	68109760	-	intron-Distal	7.03661	28.51276	K562	LIN28B
chr17	68064549	68064683	-	intron-Distal	3.22838	5.09410	K562	GTF2F1
chr17	68050255	68050317	-	intron-Distal	3.46990	9.28898	K562	KHDRBS1
chr17	68033885	68033956	-	intron-Distal	4.65705	8.27013	K562	U2AF2
chr17	68022382	68022443	-	intron-Distal	3.38124	3.87218	K562	SAFB2
chr17	68041092	68041166	-	intron-Distal	3.77063	3.22483	K562	SAFB2
chr17	68046966	68047084	-	intron-Distal	3.47220	6.68638	K562	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for AC002539.1 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for AC002539.1 is not available on ENCORE database.
7 RBPs can affect the levels of AC002539.1.

The Knockdown/knockout RNA-Seq assay for AC002539.1 is not available on ENCORE database.

7 RBPs can affect the gene expression of AC002539.1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AC002539.1	ENSG00000230258.2	49.03060	84.44190	-0.78430	1.96560	1.47170	K562	AGGF1
AC002539.1	ENSG00000230258.2	31.34070	87.86050	-1.48720	5.09360	4.19580	K562	AKAP8L
AC002539.1	ENSG00000230258.2	24.46370	66.08870	-1.43380	3.87350	2.85920	K562	FIP1L1
AC002539.1	ENSG00000230258.2	74.88300	35.52210	1.07580	2.59330	2.01260	K562	HNRNPC
AC002539.1	ENSG00000230258.2	55.94960	93.26010	-0.73710	2.17850	1.45710	K562	KIF1C
AC002539.1	ENSG00000230258.2	51.99720	104.47230	-1.00660	3.62130	2.55950	K562	MBNL1
AC002539.1	ENSG00000230258.2	46.78310	84.90380	-0.85980	2.20200	1.66280	K562	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AC002539.1

General Information

Functions

Localization

Domains (AlphaFold: AC002539.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AC002539.1 is not avaliable on ENCORE database.

17 proteins are bound to AC002539.1 RNA:

eCLIP assay for AC002539.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AC002539.1 is not available on ENCORE database.

7 RBPs can affect the gene expression of AC002539.1 :

The Knockdown/knockout RNA-Seq assay for AC002539.1 is not available on ENCORE database.

No RBPs affect the alternative splcing events of AC002539.1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for AC002539.1 is not avaliable on ENCORE database.