ZNF106

General Information

Gene Name : ZNF106
Gene ID : ENSG00000103994.17
Essential Gene : No

Functions

Novel RBP

Localization(RBPImage: ZNF106)

Nuclei
Nucleolus
Cytoplasm
Cytosolic
Nuclear release mitosis

Domains (AlphaFold: ZNF106)

ZNF

Antibody Validation

Bethyl Labs: A301-527A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZNF106	ENSG00000103994.17	24.72	22.70	23.71	ENCSR000AEF
HepG2	ZNF106	ENSG00000103994.17	14.93	19.84	17.38	ENCSR985KAT
K562	ZNF106	ENSG00000103994.17	25.86	28.88	27.37	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	ZNF106-BGKcLV08-K562	ENCSR660WRQ	ZNF106	K562	Released		ENCSR015KGT	CRISPR	KD% = 96.7,96.7
knockdown followed by RNA-seq	ZNF106-BGHcLV10-HepG2	ENCSR636DVA	ZNF106	HepG2	Released		ENCSR775ZWO	CRISPR	KD% = 96.7,96.6

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
ZNF106	ENCAB444XHD	A301-527A	1			Released, ENCODE3

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
ZNF106	K562	shRNA			BGKLV32-63,BGKLV32-64	BGKLV32-1,BGKLV32-2		NotSatisfied	ENCODE3
ZNF106	HepG2	shRNA			BGHLV27-63,BGHLV27-64	BGHLV27-1,BGHLV27-2		NotSatisfied	ENCODE3
ZNF106	HepG2	shRNA			BGHLV31-59,BGHLV31-60	BGHLV31-1,BGHLV31-2		NotSatisfied	ENCODE3
ZNF106	K562	CRISPR			BGKcLV06-45,BGKcLV06-46	BGKcLV06-1,BGKcLV06-2		NotSatisfied	ENCODE4	bad KD%
ZNF106	K562	CRISPR	ENCSR660WRQ	ENCSR015KGT	ZFP106-BGKcLV08-87,ZFP106-BGKcLV08-88	NT-BGKcLV08-1,NT-BGKcLV08-2	96.7,96.7	Released	ENCODE4
ZNF106	K562	CRISPR			BGKcLV08-89,BGKcLV08-90	BGKcLV08-1,BGKcLV08-2		NotSatisfied	ENCODE4
ZNF106	HepG2	CRISPR			BGHcLV07-45,BGHcLV07-46	BGHcLV07-1,BGHcLV07-2		NotSatisfied	ENCODE4	bad KD%
ZNF106	HepG2	CRISPR			BGHcLV09-33,BGHcLV09-34	BGHcLV09-1,BGHcLV09-2	97.7,97.3	NotSatisfied	ENCODE4
ZNF106	HepG2	CRISPR	ENCSR636DVA	ENCSR775ZWO	ZFP106-BGHcLV10-55,ZFP106-BGHcLV10-56	NT-BGHcLV10-1,NT-BGHcLV10-2	96.7,96.6	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

ZNF106: Click to RBP Image Database

Nuclei

Nucleolus

Cytoplasm

Cytosolic

Nuclear release mitosis

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
ZNF106	Product_ID: A301-527A Lot_ID: 1 Source: Bethyl Labs Target Name: ZNF106-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZNF106 is not avaliable on ENCORE database.

Proteins bound to RNA

ZNF106 RNA is bound by 22 proteins.

CanvasJS.com

eCLIP assay for ZNF106 is not avaliable on ENCORE database.

22 proteins are bound to ZNF106 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	42743944	42744050	-	3'-UTR,CDS,intron-Distal	4.77772	11.13876	HepG2	BCLAF1
chr15	42714567	42714701	-	CDS,intron-Distal,intron-Proximal	4.81211	10.08262	K562	AQR
chr15	42707859	42707905	-	3'-UTR,intron-Distal,intron-Proximal	4.64357	9.89033	K562	UPF1
chr15	42705277	42705343	-	3'-UTR,intron-Distal	4.55391	8.85840	K562	UPF1
chr15	42749305	42749357	-	CDS,intron-Distal,intron-Proximal	3.56802	8.64848	K562	UCHL5
chr15	42744053	42744137	-	3'-UTR,CDS,intron-Distal	4.41674	8.58706	K562	UCHL5
chr15	42727539	42727625	-	CDS,intron-Distal,intron-Proximal	3.99595	8.47339	HepG2	PRPF8
chr15	42714770	42714819	-	CDS,intron-Distal,intron-Proximal	4.02328	8.34773	K562	YBX3
chr15	42783187	42783262	-	5'-UTR,intron-Distal	3.44148	8.31998	HepG2	DDX3X
chr15	42744064	42744152	-	3'-UTR,CDS,intron-Distal	4.41655	7.97334	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 75 entries

eCLIP assay for ZNF106 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZNF106 is not available on ENCORE database.
77 RBPs can affect the levels of ZNF106.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZNF106 is not available on ENCORE database.

77 RBPs can affect the gene expression of ZNF106 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZNF106	ENSG00000103994.12	602.71910	1512.69600	-1.32760	31.53750	29.31170	HepG2	MSI2
ZNF106	ENSG00000103994.12	2261.22790	4712.39290	-1.05940	29.87140	27.31060	K562	GRSF1
ZNF106	ENSG00000103994.12	1005.48580	1762.58490	-0.80980	24.22590	22.73830	HepG2	PUS1
ZNF106	ENSG00000103994.12	821.04990	1549.41820	-0.91620	19.70740	18.59600	HepG2	TIAL1
ZNF106	ENSG00000103994.12	932.36870	1563.18390	-0.74550	18.72730	17.42840	HepG2	TRIM56
ZNF106	ENSG00000103994.12	680.89800	1392.54550	-1.03220	18.80690	17.23330	HepG2	DDX21
ZNF106	ENSG00000103994.12	1405.38860	2126.03700	-0.59720	17.92040	16.83050	HepG2	ZNF622
ZNF106	ENSG00000103994.12	762.46540	1403.09760	-0.87990	14.39430	13.05640	HepG2	ZC3H8
ZNF106	ENSG00000103994.12	2854.72790	1970.42940	0.53470	13.67050	12.79110	HepG2	SRSF1
ZNF106	ENSG00000103994.12	1100.58960	1628.71610	-0.56550	14.07300	12.56060	HepG2	ILF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 87 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZNF106 is not available on ENCORE database.

5 RBPs can affect the splicing of ZNF106 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	ZNF106	ENSG00000103994.12	chr15	-	42731230	42732011			42731230	42731750	42734270	42734612	0.26700	0.00000	0.00000	longer	K562	SRSF1
A3SS	ZNF106	ENSG00000103994.12	chr15	-	42738786	42738874			42738786	42738856	42740269	42740903	0.17800	0.00002	0.00021	longer	K562	AQR
A3SS	ZNF106	ENSG00000103994.12	chr15	-	42720215	42720350			42720215	42720332	42727581	42727745	0.10100	0.00008	0.00072	longer	K562	AQR
MXE	ZNF106	ENSG00000103994.12	chr15	-	42749155	42749356	42758250	42758312	42743175	42744152	42764433	42764519	-0.26000	0.00094	0.08259	2included	HepG2	PCBP2
A3SS	ZNF106	ENSG00000103994.12	chr15	-	42731230	42732011			42731230	42731750	42734270	42734612	0.24200	0.00106	0.08387	longer	HepG2	RBM22
A3SS	ZNF106	ENSG00000103994.12	chr15	-	42731230	42732011			42731230	42731750	42734270	42734612	-0.23500	0.00286	0.09394	shorter	HepG2	U2AF1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZNF106

General Information

Functions

Localization(RBPImage: ZNF106)

Domains (AlphaFold: ZNF106)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZNF106 is not avaliable on ENCORE database.

22 proteins are bound to ZNF106 RNA:

eCLIP assay for ZNF106 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZNF106 is not available on ENCORE database.

77 RBPs can affect the gene expression of ZNF106 :

The Knockdown/knockout RNA-Seq assay for ZNF106 is not available on ENCORE database.

5 RBPs can affect the splicing of ZNF106 :

The Knockdown/knockout RNA-Seq assay for ZNF106 is not avaliable on ENCORE database.