WDTC1

General Information

Gene Name : WDTC1
Gene ID : ENSG00000142784.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: WDTC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	WDTC1	ENSG00000142784.15	7.93	12.92	10.43	ENCSR000AEF
HepG2	WDTC1	ENSG00000142784.15	8.55	4.89	6.72	ENCSR985KAT
K562	WDTC1	ENSG00000142784.15	21.85	18.07	19.96	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for WDTC1 is not avaliable on ENCORE database.

Proteins bound to RNA

WDTC1 RNA is bound by 22 proteins.

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eCLIP assay for WDTC1 is not avaliable on ENCORE database.

22 proteins are bound to WDTC1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	27633944	27634081	+	3'-UTR,intron-Distal,intron-Proximal	5.31455	36.25173	K562	PCBP1
chr1	27632962	27633092	+	3'-UTR,intron-Distal,intron-Proximal	3.13660	28.74081	K562	UPF1
chr1	27633984	27634083	+	3'-UTR,intron-Distal,intron-Proximal	3.48313	26.90752	K562	ILF3
chr1	27634573	27634667	+	3'-UTR,intron-Proximal	4.73336	26.54546	K562	ILF3
chr1	27634571	27634623	+	3'-UTR,intron-Proximal	5.72760	16.52824	K562	PCBP1
chr1	27634571	27634657	+	3'-UTR,intron-Proximal	4.15598	14.86163	K562	UPF1
chr1	27633128	27633236	+	3'-UTR,intron-Proximal	5.04107	14.34649	K562	PCBP1
chr1	27631684	27631775	+	intron-Proximal	5.52192	13.75908	K562	AQR
chr1	27634353	27634384	+	3'-UTR,intron-Distal	4.02935	13.05157	K562	ILF3
chr1	27630306	27630369	+	intron-Proximal	5.40475	12.70303	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 63 entries

eCLIP assay for WDTC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for WDTC1 is not available on ENCORE database.
87 RBPs can affect the levels of WDTC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for WDTC1 is not available on ENCORE database.

87 RBPs can affect the gene expression of WDTC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
WDTC1	ENSG00000142784.11	298.80080	892.43220	-1.57860	23.39000	21.70180	HepG2	MATR3
WDTC1	ENSG00000142784.11	2657.01150	1530.21980	0.79600	15.99400	14.63750	K562	HNRNPC
WDTC1	ENSG00000142784.11	322.17440	786.91050	-1.28840	14.25610	12.37420	K562	G3BP2
WDTC1	ENSG00000142784.11	391.48340	836.37300	-1.09520	13.69510	12.32110	HepG2	IGF2BP2
WDTC1	ENSG00000142784.11	1046.39800	1603.60590	-0.61590	11.44250	10.29820	K562	FXR1
WDTC1	ENSG00000142784.11	2933.83140	2221.60640	0.40110	11.29480	9.92850	K562	NSUN2
WDTC1	ENSG00000142784.11	434.72100	716.21270	-0.72030	10.93250	9.74660	HepG2	ZC3H8
WDTC1	ENSG00000142784.11	2373.91660	1442.21970	0.71890	11.14410	9.32140	K562	FIP1L1
WDTC1	ENSG00000142784.11	523.99760	865.38660	-0.72380	10.20290	9.23410	HepG2	TAF15
WDTC1	ENSG00000142784.11	436.76640	822.86420	-0.91380	9.60770	8.40600	HepG2	G3BP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 99 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for WDTC1 is not available on ENCORE database.

6 RBPs can affect the splicing of WDTC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	WDTC1	ENSG00000142784.11	chr1	+	27630111	27630286	27627716	27627952	27631491	27631684	-0.22800	0.00000	0.00009	excluded	K562	HNRNPU
A3SS	WDTC1	ENSG00000142784.11	chr1	+	27630111	27631684	27631491	27631684	27627716	27627952	-0.44200	0.00000	0.00068	shorter	K562	HNRNPU
SE	WDTC1	ENSG00000142784.11	chr1	+	27630111	27630286	27627716	27627952	27631491	27631684	-0.21000	0.00030	0.00778	excluded	K562	SRSF1
RI	WDTC1	ENSG00000142784.11	chr1	+	27630111	27631684	27630111	27630286	27631491	27631684	0.12400	0.00065	0.01471	included	HepG2	G3BP1
RI	WDTC1	ENSG00000142784.11	chr1	+	27630111	27631684	27630111	27630286	27631491	27631684	0.13100	0.00147	0.01694	included	HepG2	RBM22
RI	WDTC1	ENSG00000142784.11	chr1	+	27630111	27631684	27630111	27630286	27631491	27631684	0.10100	0.00437	0.07324	included	K562	RBM22
RI	WDTC1	ENSG00000142784.11	chr1	+	27630111	27631684	27630111	27630286	27631491	27631684	0.07400	0.00663	0.06151	included	HepG2	HNRNPK
SE	WDTC1	ENSG00000142784.11	chr1	+	27599028	27599125	27589642	27589726	27608729	27608776	-0.05900	0.00809	0.07736	excluded	HepG2	U2AF2

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

WDTC1

General Information

Functions

Localization

Domains (AlphaFold: WDTC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for WDTC1 is not avaliable on ENCORE database.

22 proteins are bound to WDTC1 RNA:

eCLIP assay for WDTC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for WDTC1 is not available on ENCORE database.

87 RBPs can affect the gene expression of WDTC1 :

The Knockdown/knockout RNA-Seq assay for WDTC1 is not available on ENCORE database.

6 RBPs can affect the splicing of WDTC1 :

The Knockdown/knockout RNA-Seq assay for WDTC1 is not avaliable on ENCORE database.