VPS26A

General Information

Gene Name : VPS26A
Gene ID : ENSG00000122958.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VPS26A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VPS26A	ENSG00000122958.14	28.25	21.13	24.69	ENCSR000AEF
HepG2	VPS26A	ENSG00000122958.14	19.05	46.03	32.54	ENCSR985KAT
K562	VPS26A	ENSG00000122958.14	59.17	57.80	58.48	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VPS26A is not avaliable on ENCORE database.

Proteins bound to RNA

VPS26A RNA is bound by 13 proteins.

CanvasJS.com

eCLIP assay for VPS26A is not avaliable on ENCORE database.

13 proteins are bound to VPS26A RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	70931211	70931255	+	3'-UTR	3.82130	16.00523	K562	PUM2
chr10	70892653	70892749	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.99331	15.95983	K562	DDX3X
chr10	70898594	70898699	+	intron-Distal	6.38414	13.80520	K562	QKI
chr10	70898595	70898748	+	intron-Distal	5.92944	12.92705	HepG2	QKI
chr10	70931361	70931440	+	3'-UTR	3.62595	12.91015	K562	PABPC4
chr10	70883953	70884037	+	5'-UTR,CDS,intron-Proximal	3.80458	12.79258	K562	DDX3X
chr10	70932557	70932601	+	3'-UTR	4.74031	8.78414	K562	PUM2
chr10	70897991	70898109	+	intron-Distal	3.24400	8.54023	K562	KHSRP
chr10	70931730	70931796	+	3'-UTR	3.71621	6.99379	K562	TIA1
chr10	70883953	70884034	+	5'-UTR	3.46615	6.09767	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 24 entries

eCLIP assay for VPS26A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VPS26A is not available on ENCORE database.
70 RBPs can affect the levels of VPS26A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VPS26A is not available on ENCORE database.

70 RBPs can affect the gene expression of VPS26A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VPS26A	ENSG00000122958.10	398.30920	959.45310	-1.26830	26.96080	25.69620	HepG2	TIAL1
VPS26A	ENSG00000122958.10	1284.60330	2480.98270	-0.94960	19.61020	17.89000	K562	UPF1
VPS26A	ENSG00000122958.10	718.48460	1533.29900	-1.09360	14.38760	13.27310	HepG2	AKAP1
VPS26A	ENSG00000122958.10	598.80490	967.89720	-0.69280	9.04410	8.11510	HepG2	TRIM56
VPS26A	ENSG00000122958.10	584.16950	879.23820	-0.58990	9.01910	7.96090	HepG2	SAFB2
VPS26A	ENSG00000122958.10	899.91470	1559.50220	-0.79320	9.73880	7.88830	K562	TIAL1
VPS26A	ENSG00000122958.10	994.95390	1621.36370	-0.70450	9.69320	7.77200	K562	PSIP1
VPS26A	ENSG00000122958.10	705.55060	1042.05110	-0.56260	8.34240	7.18380	HepG2	HNRNPF
VPS26A	ENSG00000122958.10	5158.20700	3507.06820	0.55650	7.97670	7.06660	K562	AQR
VPS26A	ENSG00000122958.10	1473.98480	2105.74940	-0.51460	8.28690	6.95690	K562	MTPAP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 80 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VPS26A is not available on ENCORE database.

18 RBPs can affect the splicing of VPS26A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	VPS26A	ENSG00000122958.10	chr10	+	70928244	70928387			70925746	70925866	70930911	70932612	-0.19800	0.00000	excluded	K562	AQR
SE	VPS26A	ENSG00000122958.10	chr10	+	70915567	70915643			70892653	70892803	70916762	70916919	-0.15200	0.00000	excluded	K562	AQR
SE	VPS26A	ENSG00000122958.10	chr10	+	70915567	70915643			70892653	70892803	70916762	70916919	-0.18500	0.00084	excluded	HepG2	TIA1
SE	VPS26A	ENSG00000122958.10	chr10	+	70915567	70915643			70892653	70892803	70916762	70916919	-0.22100	0.00000	excluded	K562	PUS1
SE	VPS26A	ENSG00000122958.10	chr10	+	70915567	70915643			70892653	70892803	70916762	70916919	0.10600	0.00000	included	HepG2	MATR3
SE	VPS26A	ENSG00000122958.10	chr10	+	70915567	70915643			70892653	70892803	70916762	70916919	-0.14800	0.00045	excluded	K562	UTP18
SE	VPS26A	ENSG00000122958.10	chr10	+	70915567	70915643			70892653	70892803	70916762	70916919	-0.16800	0.00000	excluded	K562	RBM15
SE	VPS26A	ENSG00000122958.10	chr10	+	70915567	70915643			70892653	70892803	70916762	70916919	-0.13300	0.00002	excluded	K562	AGGF1
A3SS	VPS26A	ENSG00000122958.10	chr10	+	70928226	70928387			70928244	70928387	70925734	70925866	0.06700	0.00000	longer	K562	AQR
MXE	VPS26A	ENSG00000122958.10	chr10	+	70916762	70916919	70917875	70917967	70892653	70892803	70922161	70922268	-0.20900	0.00002	2included	HepG2	MATR3

Showing 1 to 10 of 44 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VPS26A

General Information

Functions

Localization

Domains (AlphaFold: VPS26A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VPS26A is not avaliable on ENCORE database.

13 proteins are bound to VPS26A RNA:

eCLIP assay for VPS26A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VPS26A is not available on ENCORE database.

70 RBPs can affect the gene expression of VPS26A :

The Knockdown/knockout RNA-Seq assay for VPS26A is not available on ENCORE database.

18 RBPs can affect the splicing of VPS26A :

The Knockdown/knockout RNA-Seq assay for VPS26A is not avaliable on ENCORE database.