TRAPPC6A

General Information

Gene Name : TRAPPC6A
Gene ID : ENSG00000007255.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRAPPC6A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRAPPC6A	ENSG00000007255.10	0.91	11.45	6.18	ENCSR000AEF
HepG2	TRAPPC6A	ENSG00000007255.10	7.83	1.46	4.64	ENCSR985KAT
K562	TRAPPC6A	ENSG00000007255.10	10.30	3.35	6.83	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRAPPC6A is not avaliable on ENCORE database.

Proteins bound to RNA

TRAPPC6A RNA is bound by 11 proteins.

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eCLIP assay for TRAPPC6A is not avaliable on ENCORE database.

11 proteins are bound to TRAPPC6A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	45668026	45668110	-	intron-Distal,intron-Proximal	6.74812	19.16919	K562	AQR
chr19	45681388	45681456	-	CDS,intron-Distal	5.53112	15.15896	HepG2	SUB1
chr19	45666229	45666342	-	3'-UTR,intron-Distal,intron-Proximal	3.59810	10.49826	K562	UPF1
chr19	45666423	45666476	-	3'-UTR,CDS,intron-Distal	4.11551	6.99054	K562	DDX55
chr19	45667478	45667524	-	CDS,intron-Distal,intron-Proximal	4.21081	5.47926	K562	AQR
chr19	45677362	45677441	-	intron-Distal	5.25274	5.28062	HepG2	XPO5
chr19	45681044	45681214	-	intron-Distal	4.50719	5.19780	K562	NONO
chr19	45666255	45666297	-	3'-UTR,intron-Distal	4.80646	4.51142	K562	DDX6
chr19	45666431	45666478	-	3'-UTR,CDS,intron-Distal	4.05747	4.43788	HepG2	SUB1
chr19	45678774	45678898	-	intron-Distal	4.25780	3.80778	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 15 entries

eCLIP assay for TRAPPC6A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRAPPC6A is not available on ENCORE database.
89 RBPs can affect the levels of TRAPPC6A.

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The Knockdown/knockout RNA-Seq assay for TRAPPC6A is not available on ENCORE database.

89 RBPs can affect the gene expression of TRAPPC6A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRAPPC6A	ENSG00000007255.6	51.24720	312.40670	-2.60790	34.61310	33.35260	HepG2	SRSF1
TRAPPC6A	ENSG00000007255.6	65.20870	234.36310	-1.84560	17.05780	15.77180	HepG2	ETF1
TRAPPC6A	ENSG00000007255.6	85.06420	254.16120	-1.57910	16.12140	14.98700	HepG2	SRSF9
TRAPPC6A	ENSG00000007255.6	101.04690	280.80880	-1.47460	14.37890	13.24680	HepG2	TAF15
TRAPPC6A	ENSG00000007255.6	65.35320	203.58110	-1.63930	13.00130	11.78820	K562	FXR1
TRAPPC6A	ENSG00000007255.6	268.55130	121.45230	1.14470	10.51730	9.44870	HepG2	PUS1
TRAPPC6A	ENSG00000007255.6	174.43180	68.14760	1.35580	9.81430	8.62080	HepG2	HNRNPL
TRAPPC6A	ENSG00000007255.6	256.28950	74.19260	1.78830	9.72520	8.32310	HepG2	NOL12
TRAPPC6A	ENSG00000007255.6	1.10480	38.57690	-5.12590	9.37190	7.91580	K562	G3BP2
TRAPPC6A	ENSG00000007255.6	129.07240	44.06630	1.55030	8.76490	7.84920	HepG2	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 95 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRAPPC6A is not available on ENCORE database.

9 RBPs can affect the splicing of TRAPPC6A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TRAPPC6A	ENSG00000007255.6	chr19	-	45668384	45668452	45668110	45668228	45681392	45681495	0.24800	0.00001	0.00889	included	HepG2	XPO5
SE	TRAPPC6A	ENSG00000007255.6	chr19	-	45668384	45668452	45668110	45668228	45681350	45681495	-0.17200	0.00004	0.00340	excluded	HepG2	MATR3
A5SS	TRAPPC6A	ENSG00000007255.6	chr19	-	45681350	45681495	45681392	45681495	45668384	45668452	0.24200	0.00013	0.05891	longer	HepG2	SSB
SE	TRAPPC6A	ENSG00000007255.6	chr19	-	45668384	45668452	45668110	45668228	45681350	45681495	0.22100	0.00014	0.02300	included	HepG2	SSB
A5SS	TRAPPC6A	ENSG00000007255.6	chr19	-	45681350	45681495	45681392	45681495	45668384	45668452	0.28400	0.00015	0.01985	longer	HepG2	RBM22
SE	TRAPPC6A	ENSG00000007255.6	chr19	-	45668384	45668452	45668110	45668228	45681392	45681495	-0.31600	0.00016	0.01105	excluded	HepG2	PCBP1
SE	TRAPPC6A	ENSG00000007255.6	chr19	-	45668384	45668452	45668110	45668228	45681392	45681495	0.19600	0.00018	0.02237	included	HepG2	G3BP1
SE	TRAPPC6A	ENSG00000007255.6	chr19	-	45668384	45668452	45668110	45668228	45681350	45681495	-0.17000	0.00020	0.02199	excluded	HepG2	DDX3X
SE	TRAPPC6A	ENSG00000007255.6	chr19	-	45668384	45668452	45668110	45668228	45681350	45681495	-0.16900	0.00033	0.02562	excluded	HepG2	NCBP2
SE	TRAPPC6A	ENSG00000007255.6	chr19	-	45668384	45668452	45668110	45668228	45681392	45681495	0.20400	0.00034	0.01105	included	HepG2	HNRNPK

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRAPPC6A

General Information

Functions

Localization

Domains (AlphaFold: TRAPPC6A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRAPPC6A is not avaliable on ENCORE database.

11 proteins are bound to TRAPPC6A RNA:

eCLIP assay for TRAPPC6A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRAPPC6A is not available on ENCORE database.

89 RBPs can affect the gene expression of TRAPPC6A :

The Knockdown/knockout RNA-Seq assay for TRAPPC6A is not available on ENCORE database.

9 RBPs can affect the splicing of TRAPPC6A :

The Knockdown/knockout RNA-Seq assay for TRAPPC6A is not avaliable on ENCORE database.