TMEM38B

General Information

Gene Name : TMEM38B
Gene ID : ENSG00000095209.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMEM38B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMEM38B	ENSG00000095209.11	4.25	5.70	4.97	ENCSR000AEF
HepG2	TMEM38B	ENSG00000095209.11	9.51	15.17	12.34	ENCSR985KAT
K562	TMEM38B	ENSG00000095209.11	19.20	23.25	21.23	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMEM38B is not avaliable on ENCORE database.

Proteins bound to RNA

TMEM38B RNA is bound by 20 proteins.

CanvasJS.com

eCLIP assay for TMEM38B is not avaliable on ENCORE database.

20 proteins are bound to TMEM38B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	108456834	108456946	+	5'-UTR,CDS	7.84060	31.66388	HepG2	DDX3X
chr9	108495711	108495776	+	intron-Distal	4.68697	23.40437	K562	EXOSC5
chr9	108456857	108456939	+	5'-UTR	4.19312	16.91650	K562	DDX3X
chr9	108456939	108456989	+	5'-UTR,CDS	3.30968	16.13176	K562	DDX3X
chr9	108495513	108495575	+	intron-Distal	5.95725	14.98801	K562	EXOSC5
chr9	108495917	108495992	+	intron-Distal	5.89067	13.32155	K562	EXOSC5
chr9	108495875	108495910	+	intron-Distal	5.58121	11.66247	K562	EXOSC5
chr9	108496135	108496173	+	intron-Distal	4.50902	10.61559	K562	EXOSC5
chr9	108495833	108495875	+	intron-Distal	5.45725	9.68215	K562	EXOSC5
chr9	108496652	108496761	+	intron-Distal	4.93702	8.27925	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 47 entries

eCLIP assay for TMEM38B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMEM38B is not available on ENCORE database.
99 RBPs can affect the levels of TMEM38B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMEM38B is not available on ENCORE database.

99 RBPs can affect the gene expression of TMEM38B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMEM38B	ENSG00000095209.7	254.11630	644.42190	-1.34250	27.17900	25.56210	HepG2	SUCLG1
TMEM38B	ENSG00000095209.7	293.72500	840.57990	-1.51690	23.39750	21.76250	HepG2	DDX3X
TMEM38B	ENSG00000095209.7	446.49770	917.54790	-1.03910	24.02330	21.71400	K562	SRPK2
TMEM38B	ENSG00000095209.7	274.01260	796.95800	-1.54030	22.77490	21.07050	HepG2	NCBP2
TMEM38B	ENSG00000095209.7	279.05590	774.30430	-1.47230	21.69170	19.94260	HepG2	MAGOH
TMEM38B	ENSG00000095209.7	267.20750	726.06700	-1.44210	20.31600	18.43980	HepG2	ASCC1
TMEM38B	ENSG00000095209.7	75.43350	260.01550	-1.78530	16.18160	14.38230	HepG2	UCHL5
TMEM38B	ENSG00000095209.7	314.75920	619.67700	-0.97730	15.31380	14.07080	HepG2	PCBP1
TMEM38B	ENSG00000095209.7	1767.10810	931.23350	0.92410	14.89620	13.67790	K562	PUS1
TMEM38B	ENSG00000095209.7	324.59040	694.14720	-1.09660	12.23940	11.04890	HepG2	EIF2S1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMEM38B is not available on ENCORE database.

10 RBPs can affect the splicing of TMEM38B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TMEM38B	ENSG00000095209.7	chr9	+	108464987	108465103	108456824	108457053	108467877	108468034	0.17500	0.00000	0.00000	included	K562	HNRNPC
SE	TMEM38B	ENSG00000095209.7	chr9	+	108510353	108510471	108484814	108484902	108536145	108538893	-0.06800	0.00005	0.00296	excluded	K562	AKAP8L
SE	TMEM38B	ENSG00000095209.7	chr9	+	108476646	108476786	108467852	108468034	108483817	108484002	0.06100	0.00006	0.00112	included	K562	AQR
SE	TMEM38B	ENSG00000095209.7	chr9	+	108464987	108465103	108456824	108457053	108467877	108468034	-0.07400	0.00007	0.00600	excluded	K562	EFTUD2
SE	TMEM38B	ENSG00000095209.7	chr9	+	108476646	108476786	108467877	108468034	108483817	108484002	-0.07500	0.00015	0.00704	excluded	K562	AKAP8L
SE	TMEM38B	ENSG00000095209.7	chr9	+	108510353	108510471	108484814	108484902	108536145	108538893	-0.05600	0.00018	0.00696	excluded	K562	RBM15
SE	TMEM38B	ENSG00000095209.7	chr9	+	108464987	108465103	108456824	108457053	108467877	108468034	-0.07400	0.00104	0.04656	excluded	K562	HNRNPK
SE	TMEM38B	ENSG00000095209.7	chr9	+	108510353	108510471	108484814	108484902	108536145	108538893	-0.06900	0.00137	0.04777	excluded	K562	TARDBP
SE	TMEM38B	ENSG00000095209.7	chr9	+	108510353	108510471	108484814	108484902	108536145	108538893	-0.09800	0.00263	0.07611	excluded	K562	PRPF8
SE	TMEM38B	ENSG00000095209.7	chr9	+	108476646	108476786	108467877	108468034	108483817	108484002	0.09700	0.00446	0.06346	included	K562	HNRNPC

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMEM38B

General Information

Functions

Localization

Domains (AlphaFold: TMEM38B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMEM38B is not avaliable on ENCORE database.

20 proteins are bound to TMEM38B RNA:

eCLIP assay for TMEM38B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMEM38B is not available on ENCORE database.

99 RBPs can affect the gene expression of TMEM38B :

The Knockdown/knockout RNA-Seq assay for TMEM38B is not available on ENCORE database.

10 RBPs can affect the splicing of TMEM38B :

The Knockdown/knockout RNA-Seq assay for TMEM38B is not avaliable on ENCORE database.