SMTN

General Information

Gene Name : SMTN
Gene ID : ENSG00000183963.18
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SMTN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMTN	ENSG00000183963.18	1.10	2.04	1.57	ENCSR000AEF
HepG2	SMTN	ENSG00000183963.18	22.87	10.91	16.89	ENCSR985KAT
K562	SMTN	ENSG00000183963.18	20.55	11.81	16.18	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMTN is not avaliable on ENCORE database.

Proteins bound to RNA

SMTN RNA is bound by 17 proteins.

CanvasJS.com

eCLIP assay for SMTN is not avaliable on ENCORE database.

17 proteins are bound to SMTN RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	31495882	31495964	+	intron-Proximal	6.80460	24.63956	K562	AQR
chr22	31486733	31486785	+	intron-Proximal	6.27399	16.54010	K562	AQR
chr22	31493198	31493274	+	CDS,intron-Proximal	4.42252	14.00334	K562	SF3B4
chr22	31486199	31486210	+	intron-Proximal	5.87841	9.95272	K562	AQR
chr22	31492730	31492831	+	CDS,intron-Distal	4.62368	9.88154	HepG2	PPIG
chr22	31486178	31486199	+	intron-Proximal	5.78659	9.41643	K562	AQR
chr22	31493198	31493255	+	intron-Proximal	5.31896	9.26131	HepG2	SF3B4
chr22	31496156	31496240	+	intron-Distal	5.11210	8.19722	HepG2	PCBP2
chr22	31493045	31493111	+	CDS,intron-Distal,intron-Proximal	5.43858	8.04585	HepG2	PRPF8
chr22	31484115	31484149	+	intron-Proximal	4.44556	8.01338	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 52 entries

eCLIP assay for SMTN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMTN is not available on ENCORE database.
135 RBPs can affect the levels of SMTN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SMTN is not available on ENCORE database.

135 RBPs can affect the gene expression of SMTN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMTN	ENSG00000183963.14	1079.79260	400.30010	1.43150	47.22060	45.49430	HepG2	SRSF9
SMTN	ENSG00000183963.14	2349.98510	1057.17920	1.15230	45.75740	44.36680	HepG2	SRFBP1
SMTN	ENSG00000183963.14	1427.89560	672.86700	1.08540	32.80150	30.99100	HepG2	SRSF5
SMTN	ENSG00000183963.14	1023.10940	452.79410	1.17590	29.22980	27.82420	HepG2	PTBP1
SMTN	ENSG00000183963.14	1023.17970	475.62180	1.10510	28.59180	27.01990	HepG2	TRIM56
SMTN	ENSG00000183963.14	983.05340	444.94100	1.14360	28.49010	26.88790	HepG2	PCBP1
SMTN	ENSG00000183963.14	1046.43890	471.32740	1.15060	28.06640	26.52110	HepG2	SF3B4
SMTN	ENSG00000183963.14	1357.66590	444.37840	1.61120	27.92380	26.27230	HepG2	DDX6
SMTN	ENSG00000183963.14	2432.33990	986.50330	1.30180	27.90140	26.16090	K562	PUS1
SMTN	ENSG00000183963.14	1107.52250	503.87480	1.13610	26.65830	25.33090	HepG2	NELFE
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 155 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMTN is not available on ENCORE database.

15 RBPs can affect the splicing of SMTN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	SMTN	ENSG00000183963.14	chr22	+	31495047	31495882			31495047	31495165	31495730	31495882	0.28600	0.00000	0.00000	included	K562	AQR
MXE	SMTN	ENSG00000183963.14	chr22	+	31476435	31476740	31479164	31479295	31460103	31460173	31483950	31484010	-0.41300	0.00000	0.00003	2included	HepG2	MATR3
MXE	SMTN	ENSG00000183963.14	chr22	+	31476435	31476740	31479164	31479295	31460103	31460173	31483950	31484010	-0.61400	0.00000	0.00000	2included	HepG2	PTBP1
MXE	SMTN	ENSG00000183963.14	chr22	+	31476435	31476740	31479164	31479295	31460103	31460173	31483950	31484010	-0.50600	0.00000	0.00016	2included	HepG2	SRSF1
RI	SMTN	ENSG00000183963.14	chr22	+	31495047	31495882			31495047	31495165	31495730	31495882	0.12200	0.00007	0.00133	included	HepG2	RBM22
RI	SMTN	ENSG00000183963.14	chr22	+	31492983	31493324			31492983	31493046	31493254	31493324	0.38600	0.00008	0.01541	included	K562	GPKOW
MXE	SMTN	ENSG00000183963.14	chr22	+	31476435	31476740	31479164	31479295	31460103	31460173	31483950	31484010	-0.33500	0.00015	0.00820	2included	HepG2	SF3B4
SE	SMTN	ENSG00000183963.14	chr22	+	31478901	31478988			31477303	31477442	31479164	31479295	-0.12200	0.00018	0.04922	excluded	HepG2	ILF3
RI	SMTN	ENSG00000183963.14	chr22	+	31492983	31493324			31492983	31493046	31493254	31493324	-0.18800	0.00022	0.00365	excluded	HepG2	RBM22
RI	SMTN	ENSG00000183963.14	chr22	+	31492983	31493324			31492983	31493046	31493254	31493324	0.25900	0.00024	0.00321	included	K562	AKAP8L

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMTN

General Information

Functions

Localization

Domains (AlphaFold: SMTN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMTN is not avaliable on ENCORE database.

17 proteins are bound to SMTN RNA:

eCLIP assay for SMTN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMTN is not available on ENCORE database.

135 RBPs can affect the gene expression of SMTN :

The Knockdown/knockout RNA-Seq assay for SMTN is not available on ENCORE database.

15 RBPs can affect the splicing of SMTN :

The Knockdown/knockout RNA-Seq assay for SMTN is not avaliable on ENCORE database.