SENP6

General Information

Gene Name : SENP6
Gene ID : ENSG00000112701.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SENP6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SENP6	ENSG00000112701.17	49.95	38.15	44.05	ENCSR000AEF
HepG2	SENP6	ENSG00000112701.17	19.44	44.10	31.77	ENCSR985KAT
K562	SENP6	ENSG00000112701.17	34.81	38.84	36.83	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SENP6 is not avaliable on ENCORE database.

Proteins bound to RNA

SENP6 RNA is bound by 36 proteins.

CanvasJS.com

eCLIP assay for SENP6 is not avaliable on ENCORE database.

36 proteins are bound to SENP6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	76380276	76380382	+	CDS	4.82709	27.16498	HepG2	BCLAF1
chr6	76343299	76343401	+	3'-UTR,5'-UTR,CDS	3.96914	27.13972	HepG2	BCLAF1
chr6	76311828	76312063	+	5'-UTR	3.15346	24.76278	HepG2	DDX3X
chr6	76368988	76369054	+	CDS	4.61480	21.91650	HepG2	BCLAF1
chr6	76372934	76373130	+	CDS,intron-Proximal	3.10848	19.33573	K562	ZNF622
chr6	76373054	76373134	+	CDS	3.90227	18.97241	HepG2	BCLAF1
chr6	76412369	76412450	+	CDS,intron-Distal	5.05817	18.25084	HepG2	BCLAF1
chr6	76350801	76350869	+	intron-Distal	3.41819	18.19929	HepG2	PCBP2
chr6	76352910	76353030	+	intron-Distal	5.77894	17.83719	K562	KHDRBS1
chr6	76368974	76368988	+	CDS,intron-Proximal	5.40046	17.57562	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 136 entries

eCLIP assay for SENP6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SENP6 is not available on ENCORE database.
60 RBPs can affect the levels of SENP6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SENP6 is not available on ENCORE database.

60 RBPs can affect the gene expression of SENP6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SENP6	ENSG00000112701.13	2406.52650	1691.88140	0.50820	9.68830	8.92490	HepG2	SRSF1
SENP6	ENSG00000112701.13	1443.59660	1891.35220	-0.38980	7.82930	7.03010	HepG2	ZNF622
SENP6	ENSG00000112701.13	2227.88560	1445.38330	0.62410	7.94660	6.88480	HepG2	U2AF1
SENP6	ENSG00000112701.13	900.39900	1439.74710	-0.67720	7.65880	6.71260	K562	HNRNPC
SENP6	ENSG00000112701.13	1599.51270	2038.18170	-0.34970	6.45050	5.38590	HepG2	DAZAP1
SENP6	ENSG00000112701.13	4472.98290	3524.24600	0.34380	6.64780	5.21270	K562	EIF4G2
SENP6	ENSG00000112701.13	1700.45200	2474.75030	-0.54140	6.57150	5.21180	K562	PPIG
SENP6	ENSG00000112701.13	798.11280	1177.42230	-0.56100	6.57220	5.04450	K562	RCC2
SENP6	ENSG00000112701.13	1741.27750	1300.79760	0.42060	5.82990	4.91010	HepG2	ZC3H8
SENP6	ENSG00000112701.13	2096.48090	1530.27210	0.45410	5.65970	4.72710	HepG2	RBM25
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SENP6 is not available on ENCORE database.

25 RBPs can affect the splicing of SENP6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SENP6	ENSG00000112701.13	chr6	+	76332466	76332574			76331247	76331341	76333615	76333676	0.35000	0.00158	included	HepG2	ILF3
SE	SENP6	ENSG00000112701.13	chr6	+	76423228	76423297			76421043	76421132	76423390	76423541	-0.16100	0.00000	excluded	K562	AQR
SE	SENP6	ENSG00000112701.13	chr6	+	76412360	76412788			76407140	76407233	76419242	76419346	-0.22600	0.00000	excluded	K562	AQR
SE	SENP6	ENSG00000112701.13	chr6	+	76385150	76385184			76380268	76380436	76385575	76385770	-0.13400	0.00000	excluded	K562	AQR
SE	SENP6	ENSG00000112701.13	chr6	+	76350399	76350420			76344422	76344527	76357446	76357517	-0.33700	0.00000	excluded	K562	U2AF1
SE	SENP6	ENSG00000112701.13	chr6	+	76350399	76350420			76344422	76344527	76357446	76357517	-0.30400	0.00000	excluded	K562	HNRNPL
A3SS	SENP6	ENSG00000112701.13	chr6	+	76388490	76388643			76388526	76388643	76388298	76388408	0.08600	0.00000	longer	K562	AQR
MXE	SENP6	ENSG00000112701.13	chr6	+	76407140	76407233	76412360	76412788	76388526	76388643	76419242	76419346	0.20200	0.00000	1included	K562	AQR
MXE	SENP6	ENSG00000112701.13	chr6	+	76423228	76423297	76423390	76423519	76421043	76421132	76425100	76425620	-0.16500	0.00000	2included	K562	AQR
MXE	SENP6	ENSG00000112701.13	chr6	+	76405519	76405639	76407140	76407233	76388526	76388643	76419242	76419346	-0.21400	0.00000	2included	K562	AQR

Showing 1 to 10 of 51 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SENP6

General Information

Functions

Localization

Domains (AlphaFold: SENP6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SENP6 is not avaliable on ENCORE database.

36 proteins are bound to SENP6 RNA:

eCLIP assay for SENP6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SENP6 is not available on ENCORE database.

60 RBPs can affect the gene expression of SENP6 :

The Knockdown/knockout RNA-Seq assay for SENP6 is not available on ENCORE database.

25 RBPs can affect the splicing of SENP6 :

The Knockdown/knockout RNA-Seq assay for SENP6 is not avaliable on ENCORE database.