SELENBP1

General Information

Gene Name : SELENBP1
Gene ID : ENSG00000143416.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SELENBP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SELENBP1	ENSG00000143416.20	0.00	0.00	0.00	ENCSR000AEF
HepG2	SELENBP1	ENSG00000143416.20	32.73	25.13	28.93	ENCSR985KAT
K562	SELENBP1	ENSG00000143416.20	32.52	30.44	31.48	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SELENBP1 is not avaliable on ENCORE database.

Proteins bound to RNA

SELENBP1 RNA is bound by 9 proteins.

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eCLIP assay for SELENBP1 is not avaliable on ENCORE database.

9 proteins are bound to SELENBP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	151341961	151342153	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.57982	15.40159	K562	PRPF8
chr1	151342144	151342200	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.18079	14.81397	K562	AQR
chr1	151341983	151342086	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.06782	14.24262	K562	AQR
chr1	151342148	151342191	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.10649	8.23509	HepG2	AQR
chr1	151342178	151342236	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.59012	8.19289	HepG2	PPIG
chr1	151341549	151341625	-	3'-UTR,CDS,intron-Distal	4.33464	8.06490	HepG2	PPIG
chr1	151337657	151337753	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.07750	6.81564	HepG2	PRPF8
chr1	151342164	151342240	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.92063	6.81136	K562	ZNF622
chr1	151341762	151341814	-	intron-Distal,intron-Proximal	3.88443	5.99968	K562	PRPF8
chr1	151341935	151342022	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.60148	5.90680	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 25 entries

eCLIP assay for SELENBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SELENBP1 is not available on ENCORE database.
118 RBPs can affect the levels of SELENBP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SELENBP1 is not available on ENCORE database.

118 RBPs can affect the gene expression of SELENBP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SELENBP1	ENSG00000143416.16	103.91440	687.86580	-2.72670	70.98760	69.33300	HepG2	SRFBP1
SELENBP1	ENSG00000143416.16	1722.62470	597.19440	1.52820	67.00280	65.33720	HepG2	SSB
SELENBP1	ENSG00000143416.16	155.34850	552.15520	-1.82960	37.79670	36.00760	HepG2	PCBP1
SELENBP1	ENSG00000143416.16	170.14030	496.72060	-1.54570	27.68710	26.28590	HepG2	SRSF9
SELENBP1	ENSG00000143416.16	238.24840	609.03840	-1.35410	23.05280	21.84950	HepG2	RBM22
SELENBP1	ENSG00000143416.16	68.72840	371.98470	-2.43630	20.57730	18.82760	HepG2	RAVER1
SELENBP1	ENSG00000143416.16	958.78540	393.27640	1.28560	17.92810	16.13550	HepG2	XRN2
SELENBP1	ENSG00000143416.16	670.61370	304.71540	1.13790	14.99130	13.68030	HepG2	HNRNPA1
SELENBP1	ENSG00000143416.16	589.86340	245.28920	1.26580	13.51620	12.20320	HepG2	GPKOW
SELENBP1	ENSG00000143416.16	669.74910	1241.51050	-0.89040	12.05580	10.95550	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 137 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SELENBP1 is not available on ENCORE database.

36 RBPs can affect the splicing of SELENBP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SELENBP1	ENSG00000143416.16	chr1	-	151338750	151338929	151338243	151338322	151339197	151339380	-0.51800	0.00000	excluded	K562	PCBP1
SE	SELENBP1	ENSG00000143416.16	chr1	-	151341479	151342030	151340674	151340795	151342188	151342245	-0.33500	0.00000	excluded	HepG2	PCBP1
SE	SELENBP1	ENSG00000143416.16	chr1	-	151338750	151338929	151338243	151338322	151339197	151339380	-0.62600	0.00000	excluded	HepG2	PCBP1
A3SS	SELENBP1	ENSG00000143416.16	chr1	-	151341917	151342090	151341917	151342030	151342188	151342245	0.14500	0.00007	longer	K562	EFTUD2
A3SS	SELENBP1	ENSG00000143416.16	chr1	-	151338243	151338929	151338243	151338322	151339197	151339380	-0.63100	0.00000	shorter	K562	PCBP1
A3SS	SELENBP1	ENSG00000143416.16	chr1	-	151338243	151338929	151338243	151338322	151339197	151339380	-0.72500	0.00000	shorter	HepG2	PCBP1
RI	SELENBP1	ENSG00000143416.16	chr1	-	151341479	151342245	151341479	151342030	151342188	151342245	0.18600	0.00000	included	HepG2	SF3A3
RI	SELENBP1	ENSG00000143416.16	chr1	-	151341479	151342030	151341479	151341665	151341917	151342030	0.37800	0.00003	included	HepG2	SF3A3
RI	SELENBP1	ENSG00000143416.16	chr1	-	151337664	151338160	151337664	151337757	151338038	151338160	0.17600	0.00001	included	K562	PRPF8
RI	SELENBP1	ENSG00000143416.16	chr1	-	151341479	151342030	151341479	151341665	151341917	151342030	0.26200	0.00005	included	HepG2	KHSRP

Showing 1 to 10 of 99 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SELENBP1

General Information

Functions

Localization

Domains (AlphaFold: SELENBP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SELENBP1 is not avaliable on ENCORE database.

9 proteins are bound to SELENBP1 RNA:

eCLIP assay for SELENBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SELENBP1 is not available on ENCORE database.

118 RBPs can affect the gene expression of SELENBP1 :

The Knockdown/knockout RNA-Seq assay for SELENBP1 is not available on ENCORE database.

36 RBPs can affect the splicing of SELENBP1 :

The Knockdown/knockout RNA-Seq assay for SELENBP1 is not avaliable on ENCORE database.