RP11-529K1.3

General Information

Gene Name : RP11-529K1.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-529K1.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-529K1.3 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-529K1.3 RNA is bound by 15 proteins.

CanvasJS.com

eCLIP assay for RP11-529K1.3 is not avaliable on ENCORE database.

15 proteins are bound to RP11-529K1.3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	70380821	70380952	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.02851	20.57840	K562	DDX3X
chr16	70335018	70335136	+	intron-Distal	5.63577	10.55181	HepG2	PTBP1
chr16	70380801	70380868	+	5'-UTR,intron-Distal	5.55369	8.17272	HepG2	DDX3X
chr16	70398540	70398599	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14851	7.92471	HepG2	PRPF8
chr16	70390062	70390154	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.98720	7.03378	HepG2	GRWD1
chr16	70335002	70335144	+	intron-Distal	4.34224	6.98272	HepG2	MATR3
chr16	70389381	70389446	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.66530	6.67313	HepG2	BCLAF1
chr16	70363963	70364022	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.84467	6.26248	HepG2	PRPF8
chr16	70398429	70398484	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.68997	5.55825	HepG2	U2AF2
chr16	70370456	70370533	+	intron-Distal	5.04037	5.47569	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 23 entries

eCLIP assay for RP11-529K1.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-529K1.3 is not available on ENCORE database.
96 RBPs can affect the levels of RP11-529K1.3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RP11-529K1.3 is not available on ENCORE database.

96 RBPs can affect the gene expression of RP11-529K1.3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-529K1.3	ENSG00000260537.1	0.00000	111.63560	-99999.99999	33.67630	29.87740	K562	DDX19B
RP11-529K1.3	ENSG00000260537.1	171.76150	13.54830	3.66410	25.20290	22.75390	HepG2	UBE2L3
RP11-529K1.3	ENSG00000260537.1	20.78940	277.83590	-3.74030	17.24620	14.65180	HepG2	U2AF2
RP11-529K1.3	ENSG00000260537.1	66.58730	0.00000	99999.99990	16.14710	13.60760	HepG2	RPS5
RP11-529K1.3	ENSG00000260537.1	17.06820	121.89640	-2.83630	14.74240	13.28560	HepG2	TARDBP
RP11-529K1.3	ENSG00000260537.1	96.78030	10.60910	3.18930	14.82520	12.58890	HepG2	XRCC6
RP11-529K1.3	ENSG00000260537.1	81.94000	0.00000	99999.99990	16.01300	12.49230	HepG2	NUSAP1
RP11-529K1.3	ENSG00000260537.1	13.04860	100.06480	-2.93900	13.96600	12.38600	HepG2	SF3A3
RP11-529K1.3	ENSG00000260537.1	0.00000	38.76680	-99999.99999	13.86820	12.30820	HepG2	DDX19B
RP11-529K1.3	ENSG00000260537.1	51.42970	0.00000	99999.99990	13.50990	11.84070	HepG2	RPS2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 103 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-529K1.3 is not available on ENCORE database.

10 RBPs can affect the splicing of RP11-529K1.3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70348804	70348858			70333116	70333257	70349871	70350007	-0.42600	0.00004	0.00215	excluded	K562	RBM15
SE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70351398	70351491			70349871	70350007	70358487	70358590	-0.10000	0.00006	0.00294	excluded	HepG2	SF3A3
SE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70346511	70346560			70333116	70333257	70348804	70348858	-0.17800	0.00035	0.01322	excluded	HepG2	SF3A3
SE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70346511	70346560			70333116	70333257	70348804	70348858	0.09900	0.00043	0.03207	included	HepG2	AKAP1
MXE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70346511	70346560	70348804	70348858	70333116	70333257	70349871	70350007	0.22700	0.00066	0.01875	1included	HepG2	DDX55
SE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70351398	70351491			70349871	70350007	70358487	70358590	0.05300	0.00067	0.07118	included	HepG2	RBFOX2
MXE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70346511	70346560	70348804	70348858	70333116	70333257	70349871	70350007	0.27000	0.00110	0.07922	1included	HepG2	UCHL5
SE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70351398	70351491			70349871	70350007	70358487	70358590	-0.06800	0.00126	0.04048	excluded	K562	UTP18
SE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70346511	70346560			70333116	70333257	70348804	70348858	-0.17300	0.00128	0.01507	excluded	K562	AQR
SE	RP11-529K1.3	ENSG00000260537.1	chr16	+	70346511	70346560			70333116	70333257	70348804	70348858	-0.33300	0.00789	0.09811	excluded	K562	HNRNPC

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-529K1.3

General Information

Functions

Localization

Domains (AlphaFold: RP11-529K1.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-529K1.3 is not avaliable on ENCORE database.

15 proteins are bound to RP11-529K1.3 RNA:

eCLIP assay for RP11-529K1.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-529K1.3 is not available on ENCORE database.

96 RBPs can affect the gene expression of RP11-529K1.3 :

The Knockdown/knockout RNA-Seq assay for RP11-529K1.3 is not available on ENCORE database.

10 RBPs can affect the splicing of RP11-529K1.3 :

The Knockdown/knockout RNA-Seq assay for RP11-529K1.3 is not avaliable on ENCORE database.