RNF128

General Information

Gene Name : RNF128
Gene ID : ENSG00000133135.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNF128)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNF128	ENSG00000133135.13	0.00	0.00	0.00	ENCSR000AEF
HepG2	RNF128	ENSG00000133135.13	13.45	19.91	16.68	ENCSR985KAT
K562	RNF128	ENSG00000133135.13	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNF128 is not avaliable on ENCORE database.

Proteins bound to RNA

RNF128 RNA is bound by 16 proteins.

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eCLIP assay for RNF128 is not avaliable on ENCORE database.

16 proteins are bound to RNF128 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	105970051	105970178	+	5'-UTR,CDS,intron-Distal	5.00316	21.57456	HepG2	RPS3
chrX	105970191	105970289	+	CDS,intron-Distal	4.08380	20.86601	HepG2	DDX3X
chrX	105975299	105975421	+	intron-Distal	4.81096	14.71135	HepG2	QKI
chrX	105970100	105970190	+	5'-UTR,CDS,intron-Distal	3.81028	13.93821	HepG2	DDX3X
chrX	105969949	105970037	+	5'-UTR,intron-Distal	4.28321	13.85072	HepG2	DDX3X
chrX	105982330	105982406	+	intron-Distal	4.16955	13.74380	HepG2	PTBP1
chrX	105970209	105970288	+	CDS,intron-Distal	5.77919	12.21524	HepG2	RPS3
chrX	105970308	105970432	+	CDS,intron-Distal	4.84505	11.56026	HepG2	RPS3
chrX	105975292	105975398	+	intron-Distal	3.43246	9.95932	HepG2	PTBP1
chrX	106034317	106034462	+	CDS	5.16025	8.86021	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 38 entries

eCLIP assay for RNF128 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNF128 is not available on ENCORE database.
114 RBPs can affect the levels of RNF128.

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The Knockdown/knockout RNA-Seq assay for RNF128 is not available on ENCORE database.

114 RBPs can affect the gene expression of RNF128 :

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Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNF128	ENSG00000133135.9	4940.18460	2447.03830	1.01340	65.01870	63.28710	HepG2	ZNF622
RNF128	ENSG00000133135.9	819.60960	2639.16020	-1.68710	66.10650	62.92180	HepG2	NOL12
RNF128	ENSG00000133135.9	1619.99540	3441.25580	-1.08690	53.77800	52.27730	HepG2	SRSF1
RNF128	ENSG00000133135.9	1668.62980	3524.20690	-1.07860	48.07460	46.46260	HepG2	NELFE
RNF128	ENSG00000133135.9	1046.87910	3508.78640	-1.74490	47.60150	45.14730	HepG2	MAGOH
RNF128	ENSG00000133135.9	1653.45610	3282.38300	-0.98930	41.66050	39.83860	HepG2	RECQL
RNF128	ENSG00000133135.9	1150.83150	2672.30270	-1.21540	39.93850	37.66570	HepG2	PUM2
RNF128	ENSG00000133135.9	3865.76170	1538.31120	1.32930	36.45430	34.25980	HepG2	NSUN2
RNF128	ENSG00000133135.9	1603.01490	2674.20660	-0.73830	30.66920	29.12480	HepG2	PUM1
RNF128	ENSG00000133135.9	1615.57500	3093.22010	-0.93710	30.12660	28.54050	HepG2	TAF15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 116 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNF128 is not available on ENCORE database.

1 RBPs can affect the splicing of RNF128 :

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Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	RNF128	ENSG00000133135.9	chrX	+	106033415	106033512			106031147	106031230	106034295	106034464	-0.07700	0.00000	0.00003	excluded	HepG2	SRSF1

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNF128

General Information

Functions

Localization

Domains (AlphaFold: RNF128)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNF128 is not avaliable on ENCORE database.

16 proteins are bound to RNF128 RNA:

eCLIP assay for RNF128 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNF128 is not available on ENCORE database.

114 RBPs can affect the gene expression of RNF128 :

The Knockdown/knockout RNA-Seq assay for RNF128 is not available on ENCORE database.

1 RBPs can affect the splicing of RNF128 :

The Knockdown/knockout RNA-Seq assay for RNF128 is not avaliable on ENCORE database.