REPS1

General Information

Gene Name : REPS1
Gene ID : ENSG00000135597.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: REPS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	REPS1	ENSG00000135597.18	27.72	30.12	28.92	ENCSR000AEF
HepG2	REPS1	ENSG00000135597.18	29.15	33.65	31.40	ENCSR985KAT
K562	REPS1	ENSG00000135597.18	22.01	24.21	23.11	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for REPS1 is not avaliable on ENCORE database.

Proteins bound to RNA

REPS1 RNA is bound by 18 proteins.

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eCLIP assay for REPS1 is not avaliable on ENCORE database.

18 proteins are bound to REPS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	139308497	139308596	-	intron-Distal	4.24902	12.54324	HepG2	EFTUD2
chr6	139308621	139308692	-	CDS,intron-Distal	6.11624	9.40852	HepG2	PRPF8
chr6	139277542	139277646	-	intron-Distal	4.35720	9.06128	HepG2	SUGP2
chr6	139265106	139265154	-	CDS,intron-Distal,intron-Proximal	3.32892	7.93794	HepG2	BCLAF1
chr6	139277705	139277777	-	intron-Distal	5.20663	7.63523	HepG2	MATR3
chr6	139266723	139266838	-	CDS,intron-Distal,intron-Proximal	3.78786	6.97808	HepG2	BCLAF1
chr6	139232866	139232967	-	intron-Distal	4.85615	6.57498	HepG2	PCBP2
chr6	139232720	139232866	-	intron-Distal	4.17486	6.43614	HepG2	PCBP2
chr6	139229791	139229923	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.60329	5.82083	HepG2	GRWD1
chr6	139238913	139238991	-	intron-Distal	3.81896	5.78005	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for REPS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for REPS1 is not available on ENCORE database.
65 RBPs can affect the levels of REPS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for REPS1 is not available on ENCORE database.

65 RBPs can affect the gene expression of REPS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
REPS1	ENSG00000135597.14	2348.76470	1035.75220	1.18110	47.65770	45.30040	K562	DDX47
REPS1	ENSG00000135597.14	1205.35170	452.54840	1.41320	22.30690	20.01980	K562	RPS19
REPS1	ENSG00000135597.14	1286.07390	649.25930	0.98600	19.97010	17.85960	K562	SYNCRIP
REPS1	ENSG00000135597.14	815.70390	419.91630	0.95780	16.45340	15.08580	K562	FXR1
REPS1	ENSG00000135597.14	1223.50150	778.74120	0.65170	13.60040	11.89910	K562	WDR43
REPS1	ENSG00000135597.14	1227.67640	417.77010	1.55500	14.05490	11.82870	K562	EIF3A
REPS1	ENSG00000135597.14	842.91700	444.26620	0.92390	10.74920	9.25670	K562	PRPF8
REPS1	ENSG00000135597.14	1003.67340	576.77070	0.79910	10.71260	8.67240	K562	SAFB
REPS1	ENSG00000135597.14	572.74620	971.47640	-0.76230	9.66860	7.66250	HepG2	EIF2S2
REPS1	ENSG00000135597.14	926.41710	571.56520	0.69660	8.68180	7.43430	K562	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 73 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for REPS1 is not available on ENCORE database.

30 RBPs can affect the splicing of REPS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	REPS1	ENSG00000135597.14	chr6	-	139247537	139247618	139242173	139242261	139251113	139251235	0.33000	0.00000	0.00004	included	HepG2	HNRNPK
SE	REPS1	ENSG00000135597.14	chr6	-	139247537	139247618	139242173	139242261	139251113	139251235	0.26000	0.00000	0.00021	included	HepG2	QKI
SE	REPS1	ENSG00000135597.14	chr6	-	139247537	139247618	139242173	139242261	139251113	139251235	-0.33300	0.00000	0.00001	excluded	K562	PUS1
SE	REPS1	ENSG00000135597.14	chr6	-	139247537	139247618	139242173	139242261	139251113	139251235	0.31800	0.00000	0.00061	included	HepG2	NCBP2
SE	REPS1	ENSG00000135597.14	chr6	-	139228631	139228737	139226006	139226269	139229804	139229953	-0.17300	0.00000	0.00002	excluded	HepG2	IGF2BP3
A3SS	REPS1	ENSG00000135597.14	chr6	-	139251113	139251300	139251113	139251235	139262471	139262615	0.22900	0.00000	0.00000	longer	K562	AQR
A5SS	REPS1	ENSG00000135597.14	chr6	-	139247537	139251235	139251113	139251235	139242173	139242261	0.42800	0.00000	0.00002	longer	HepG2	QKI
RI	REPS1	ENSG00000135597.14	chr6	-	139247537	139251235	139247537	139247618	139251113	139251235	0.40800	0.00000	0.00000	included	K562	PUS1
RI	REPS1	ENSG00000135597.14	chr6	-	139247537	139251235	139247537	139247618	139251113	139251235	0.34300	0.00000	0.00000	included	K562	AGGF1
SE	REPS1	ENSG00000135597.14	chr6	-	139247537	139247618	139242173	139242261	139251113	139251235	0.21600	0.00001	0.00393	included	HepG2	HNRNPM

Showing 1 to 10 of 58 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

REPS1

General Information

Functions

Localization

Domains (AlphaFold: REPS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for REPS1 is not avaliable on ENCORE database.

18 proteins are bound to REPS1 RNA:

eCLIP assay for REPS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for REPS1 is not available on ENCORE database.

65 RBPs can affect the gene expression of REPS1 :

The Knockdown/knockout RNA-Seq assay for REPS1 is not available on ENCORE database.

30 RBPs can affect the splicing of REPS1 :

The Knockdown/knockout RNA-Seq assay for REPS1 is not avaliable on ENCORE database.