NGDN

General Information

Gene Name : NGDN
Gene ID : ENSG00000129460.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NGDN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NGDN	ENSG00000129460.15	45.36	42.43	43.89	ENCSR000AEF
HepG2	NGDN	ENSG00000129460.15	167.84	184.43	176.13	ENCSR985KAT
K562	NGDN	ENSG00000129460.15	51.95	49.80	50.88	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NGDN is not avaliable on ENCORE database.

Proteins bound to RNA

NGDN RNA is bound by 28 proteins.

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eCLIP assay for NGDN is not avaliable on ENCORE database.

28 proteins are bound to NGDN RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	23947243	23947337	+	3'-UTR,intron-Distal	5.43548	62.22407	K562	PUM2
chr14	23945236	23945261	+	CDS,intron-Proximal	5.91634	30.20920	K562	LIN28B
chr14	23945236	23945266	+	CDS,intron-Proximal	4.92661	18.23578	HepG2	LIN28B
chr14	23944973	23944987	+	CDS,intron-Distal	5.29742	17.75173	K562	LIN28B
chr14	23946662	23946807	+	3'-UTR,CDS,intron-Proximal	4.14238	15.79499	HepG2	BUD13
chr14	23955812	23955950	+	intron-Distal	3.66788	15.23340	HepG2	SUGP2
chr14	23939230	23939334	+	5'-UTR,CDS,intron-Proximal	3.49992	14.39942	HepG2	BUD13
chr14	23945261	23945267	+	CDS	4.86237	13.19760	K562	LIN28B
chr14	23945446	23945542	+	5'-UTR,CDS,intron-Proximal	3.44691	13.12156	HepG2	BCLAF1
chr14	23945281	23945362	+	CDS,intron-Proximal	4.40310	12.70642	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 95 entries

eCLIP assay for NGDN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NGDN is not available on ENCORE database.
74 RBPs can affect the levels of NGDN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NGDN is not available on ENCORE database.

74 RBPs can affect the gene expression of NGDN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NGDN	ENSG00000129460.11	2418.52930	1340.75270	0.85100	29.51870	27.87780	HepG2	UTP3
NGDN	ENSG00000129460.11	1339.18380	484.62420	1.46630	29.21620	26.78770	K562	PRPF8
NGDN	ENSG00000129460.11	1303.60530	474.63490	1.45750	28.47720	26.71920	K562	PUS1
NGDN	ENSG00000129460.11	2009.24000	1011.99040	0.98940	17.78460	16.46410	K562	AQR
NGDN	ENSG00000129460.11	3782.57580	2601.97440	0.53970	16.47280	15.51900	HepG2	SRFBP1
NGDN	ENSG00000129460.11	704.34750	369.77040	0.92960	14.09450	12.83320	K562	FXR1
NGDN	ENSG00000129460.11	3000.45990	2152.90160	0.47880	11.52270	10.69990	HepG2	SRSF1
NGDN	ENSG00000129460.11	878.43480	487.68670	0.84890	11.85800	10.40020	K562	SRSF1
NGDN	ENSG00000129460.11	3571.71100	1565.90490	1.18950	9.74580	8.41930	HepG2	SF3A3
NGDN	ENSG00000129460.11	746.01550	459.89720	0.69780	9.20200	8.24370	K562	AGGF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 83 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NGDN is not available on ENCORE database.

12 RBPs can affect the splicing of NGDN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	NGDN	ENSG00000129460.11	chr14	+	23939214	23939431	23939214	23939310	23940114	23940389	0.07100	0.00000	0.00007	longer	K562	AQR
RI	NGDN	ENSG00000129460.11	chr14	+	23944379	23944851	23944379	23944517	23944766	23944851	0.15200	0.00000	0.00000	included	K562	PUS1
RI	NGDN	ENSG00000129460.11	chr14	+	23946408	23946769	23946408	23946565	23946711	23946769	0.49100	0.00000	0.00000	included	K562	PUS1
RI	NGDN	ENSG00000129460.11	chr14	+	23946408	23946769	23946408	23946565	23946711	23946769	0.30300	0.00000	0.00000	included	K562	AGGF1
RI	NGDN	ENSG00000129460.11	chr14	+	23946408	23946769	23946408	23946565	23946711	23946769	0.26900	0.00000	0.00000	included	K562	AKAP8L
RI	NGDN	ENSG00000129460.11	chr14	+	23946408	23946769	23946408	23946565	23946711	23946769	0.27300	0.00000	0.00000	included	K562	RBM15
RI	NGDN	ENSG00000129460.11	chr14	+	23946408	23946769	23946408	23946565	23946711	23946769	0.31100	0.00000	0.00000	included	K562	UTP18
RI	NGDN	ENSG00000129460.11	chr14	+	23944379	23944851	23944379	23944517	23944766	23944851	0.05500	0.00000	0.00000	included	K562	AQR
RI	NGDN	ENSG00000129460.11	chr14	+	23946408	23946769	23946408	23946565	23946711	23946769	0.28500	0.00000	0.00000	included	K562	AQR
RI	NGDN	ENSG00000129460.11	chr14	+	23946408	23946769	23946408	23946565	23946711	23946769	0.12200	0.00001	0.00181	included	K562	WDR3

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NGDN

General Information

Functions

Localization

Domains (AlphaFold: NGDN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NGDN is not avaliable on ENCORE database.

28 proteins are bound to NGDN RNA:

eCLIP assay for NGDN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NGDN is not available on ENCORE database.

74 RBPs can affect the gene expression of NGDN :

The Knockdown/knockout RNA-Seq assay for NGDN is not available on ENCORE database.

12 RBPs can affect the splicing of NGDN :

The Knockdown/knockout RNA-Seq assay for NGDN is not avaliable on ENCORE database.