KCNH2

General Information

Gene Name : KCNH2
Gene ID : ENSG00000055118.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: KCNH2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KCNH2	ENSG00000055118.14	0.00	0.01	0.01	ENCSR000AEF
HepG2	KCNH2	ENSG00000055118.14	0.10	0.04	0.07	ENCSR985KAT
K562	KCNH2	ENSG00000055118.14	215.17	149.56	182.37	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KCNH2 is not avaliable on ENCORE database.

Proteins bound to RNA

KCNH2 RNA is bound by 42 proteins.

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eCLIP assay for KCNH2 is not avaliable on ENCORE database.

42 proteins are bound to KCNH2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	150646955	150646963	-	3'-UTR,intron-Distal	5.08391	400.00000	K562	PABPC4
chr7	150646963	150647003	-	3'-UTR,CDS,intron-Distal	4.81166	400.00000	K562	PABPC4
chr7	150646927	150646955	-	3'-UTR,intron-Distal	5.11075	400.00000	K562	PABPC4
chr7	150642070	150642147	-	3'-UTR,intron-Distal	5.03155	58.93159	K562	PABPC4
chr7	150648502	150648508	-	intron-Distal,intron-Proximal	5.93509	50.15228	K562	AQR
chr7	150648132	150648159	-	CDS,intron-Distal	3.55810	50.06560	K562	YBX3
chr7	150646139	150646202	-	intron-Distal,intron-Proximal	6.86355	48.36285	K562	SF3B4
chr7	150647966	150647999	-	intron-Distal,intron-Proximal	6.67658	44.25902	K562	AQR
chr7	150648531	150648535	-	intron-Distal,intron-Proximal	5.71037	41.11353	K562	AQR
chr7	150648593	150648604	-	CDS,intron-Distal	4.07672	41.10633	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 248 entries

eCLIP assay for KCNH2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for KCNH2 is not available on ENCORE database.
91 RBPs can affect the levels of KCNH2.

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The Knockdown/knockout RNA-Seq assay for KCNH2 is not available on ENCORE database.

91 RBPs can affect the gene expression of KCNH2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KCNH2	ENSG00000055118.10	4627.76180	1937.35280	1.25610	54.21300	50.80480	K562	EIF3G
KCNH2	ENSG00000055118.10	17598.64260	11469.07370	0.61760	23.75510	22.03100	K562	DDX47
KCNH2	ENSG00000055118.10	15858.92810	9927.78630	0.67570	25.19880	21.90770	K562	DDX21
KCNH2	ENSG00000055118.10	5962.48250	2983.20780	0.99890	20.10220	18.20370	K562	SRSF1
KCNH2	ENSG00000055118.10	20702.20120	13593.64020	0.60680	20.57460	18.18030	K562	EIF4G2
KCNH2	ENSG00000055118.10	8594.17940	5625.53580	0.61130	19.06850	17.59170	K562	FXR1
KCNH2	ENSG00000055118.10	9587.82780	5349.44950	0.84170	19.86070	17.23060	K562	RCC2
KCNH2	ENSG00000055118.10	7589.65200	4721.79770	0.68460	20.21140	16.63240	K562	EWSR1
KCNH2	ENSG00000055118.10	13961.98890	10078.95110	0.47010	18.00470	16.12420	K562	WDR43
KCNH2	ENSG00000055118.10	13491.29510	10683.15070	0.33660	15.27090	13.71110	K562	NSUN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 101 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KCNH2 is not available on ENCORE database.

12 RBPs can affect the splicing of KCNH2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	KCNH2	ENSG00000055118.10	chr7	-	150648008	150648923	150648008	150648208	150648535	150648923	-0.05600	0.00000	0.00015	excluded	K562	PPIL4
RI	KCNH2	ENSG00000055118.10	chr7	-	150648008	150648923	150648008	150648208	150648535	150648923	-0.08600	0.00000	0.00002	excluded	K562	DROSHA
RI	KCNH2	ENSG00000055118.10	chr7	-	150648008	150648923	150648008	150648208	150648535	150648923	0.07700	0.00000	0.00000	included	K562	PUS1
RI	KCNH2	ENSG00000055118.10	chr7	-	150648008	150648923	150648008	150648208	150648535	150648923	-0.07800	0.00000	0.00029	excluded	K562	HNRNPUL1
RI	KCNH2	ENSG00000055118.10	chr7	-	150648008	150648923	150648008	150648208	150648535	150648923	0.07900	0.00000	0.00000	included	K562	PRPF8
RI	KCNH2	ENSG00000055118.10	chr7	-	150648008	150648923	150648008	150648208	150648535	150648923	0.05400	0.00000	0.00000	included	K562	UTP18
RI	KCNH2	ENSG00000055118.10	chr7	-	150648008	150648923	150648008	150648208	150648535	150648923	0.06700	0.00000	0.00000	included	K562	EFTUD2
RI	KCNH2	ENSG00000055118.10	chr7	-	150648008	150648923	150648008	150648208	150648535	150648923	0.05500	0.00000	0.00000	included	K562	AQR
SE	KCNH2	ENSG00000055118.10	chr7	-	150647255	150647508	150645943	150646137	150648535	150648618	-0.06300	0.00003	0.00095	excluded	K562	PUS1
SE	KCNH2	ENSG00000055118.10	chr7	-	150647255	150647508	150645943	150646137	150648535	150648923	0.08400	0.00013	0.00401	included	K562	SRSF1

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KCNH2

General Information

Functions

Localization

Domains (AlphaFold: KCNH2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KCNH2 is not avaliable on ENCORE database.

42 proteins are bound to KCNH2 RNA:

eCLIP assay for KCNH2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for KCNH2 is not available on ENCORE database.

91 RBPs can affect the gene expression of KCNH2 :

The Knockdown/knockout RNA-Seq assay for KCNH2 is not available on ENCORE database.

12 RBPs can affect the splicing of KCNH2 :

The Knockdown/knockout RNA-Seq assay for KCNH2 is not avaliable on ENCORE database.