IGBP1

General Information

Gene Name : IGBP1
Gene ID : ENSG00000089289.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: IGBP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	IGBP1	ENSG00000089289.15	63.20	52.06	57.63	ENCSR000AEF
HepG2	IGBP1	ENSG00000089289.15	36.01	47.30	41.66	ENCSR985KAT
K562	IGBP1	ENSG00000089289.15	39.73	39.30	39.52	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for IGBP1 is not avaliable on ENCORE database.

Proteins bound to RNA

IGBP1 RNA is bound by 11 proteins.

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eCLIP assay for IGBP1 is not avaliable on ENCORE database.

11 proteins are bound to IGBP1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	69385973	69386059	+	3'-UTR	6.71844	34.26611	HepG2	SUB1
chrX	69368619	69368670	+	CDS	3.27230	12.00793	K562	YBX3
chrX	69354586	69354641	+	CDS	3.73929	11.92769	K562	YBX3
chrX	69354557	69354586	+	CDS	3.68888	11.08616	K562	YBX3
chrX	69386080	69386169	+	3'-UTR	6.23569	11.07978	K562	PABPC4
chrX	69353963	69353985	+	CDS	4.32281	9.80049	K562	YBX3
chrX	69385967	69386069	+	3'-UTR	4.35690	9.38189	K562	NOLC1
chrX	69354531	69354557	+	CDS	3.37137	8.26212	K562	YBX3
chrX	69354477	69354504	+	CDS	3.38805	6.56666	K562	YBX3
chrX	69368670	69368684	+	CDS	3.18736	5.95282	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 22 entries

eCLIP assay for IGBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for IGBP1 is not available on ENCORE database.
95 RBPs can affect the levels of IGBP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for IGBP1 is not available on ENCORE database.

95 RBPs can affect the gene expression of IGBP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
IGBP1	ENSG00000089289.11	572.91440	2655.94050	-2.21280	31.37280	29.42820	HepG2	NCBP2
IGBP1	ENSG00000089289.11	1046.36800	2422.84440	-1.21130	24.93120	23.02710	HepG2	RBM25
IGBP1	ENSG00000089289.11	1217.75280	2678.68880	-1.13730	22.68400	21.61080	HepG2	SRSF1
IGBP1	ENSG00000089289.11	810.75930	2801.67810	-1.78890	22.53790	20.93340	HepG2	DDX3X
IGBP1	ENSG00000089289.11	1295.51850	2743.19910	-1.08230	21.24180	20.01850	HepG2	NELFE
IGBP1	ENSG00000089289.11	1221.17590	2669.73900	-1.12840	20.22240	18.75650	HepG2	QKI
IGBP1	ENSG00000089289.11	488.17120	943.26940	-0.95030	16.39110	15.35650	HepG2	TIAL1
IGBP1	ENSG00000089289.11	799.19730	1332.72950	-0.73780	15.48110	14.05440	K562	DDX47
IGBP1	ENSG00000089289.11	1077.61960	2580.17330	-1.25960	15.45760	13.96610	HepG2	MAGOH
IGBP1	ENSG00000089289.11	1330.32400	2464.79500	-0.88970	14.66560	13.60000	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 105 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for IGBP1 is not available on ENCORE database.

4 RBPs can affect the splicing of IGBP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	IGBP1	ENSG00000089289.11	chrX	+	69382195	69382314			69370059	69370172	69385682	69386174	0.07300	0.00000	0.00040	included	K562	EXOSC5
SE	IGBP1	ENSG00000089289.11	chrX	+	69368610	69368690			69366482	69366678	69385682	69386174	-0.05600	0.00004	0.00070	excluded	K562	AQR
SE	IGBP1	ENSG00000089289.11	chrX	+	69368418	69368500			69366482	69366678	69368610	69368690	0.05800	0.00008	0.02548	included	K562	SAFB
MXE	IGBP1	ENSG00000089289.11	chrX	+	69366482	69366678	69382195	69382314	69354372	69354666	69385682	69386174	-0.05600	0.00011	0.03393	2included	K562	PUM2

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

IGBP1

General Information

Functions

Localization

Domains (AlphaFold: IGBP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for IGBP1 is not avaliable on ENCORE database.

11 proteins are bound to IGBP1 RNA:

eCLIP assay for IGBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for IGBP1 is not available on ENCORE database.

95 RBPs can affect the gene expression of IGBP1 :

The Knockdown/knockout RNA-Seq assay for IGBP1 is not available on ENCORE database.

4 RBPs can affect the splicing of IGBP1 :

The Knockdown/knockout RNA-Seq assay for IGBP1 is not avaliable on ENCORE database.