GCLM

General Information

Gene Name : GCLM
Gene ID : ENSG00000023909.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GCLM)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GCLM	ENSG00000023909.9	6.39	6.45	6.42	ENCSR000AEF
HepG2	GCLM	ENSG00000023909.9	13.12	20.49	16.80	ENCSR985KAT
K562	GCLM	ENSG00000023909.9	23.73	18.35	21.04	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GCLM is not avaliable on ENCORE database.

Proteins bound to RNA

GCLM RNA is bound by 28 proteins.

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eCLIP assay for GCLM is not avaliable on ENCORE database.

28 proteins are bound to GCLM RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	94354012	94354090	-	3'-UTR,intron-Distal	3.65647	39.34886	K562	PUM2
chr1	94354392	94354448	-	3'-UTR,intron-Distal	6.61883	26.53076	K562	LIN28B
chr1	94374406	94374554	-	intron-Distal,intron-Proximal	6.55161	26.47025	K562	EFTUD2
chr1	94350822	94350892	-	3'-UTR,intron-Distal	4.64639	23.52250	K562	PUM2
chr1	94352770	94352867	-	3'-UTR,intron-Distal	4.93396	22.44660	K562	FAM120A
chr1	94354438	94354540	-	3'-UTR,intron-Distal	3.91587	21.97774	K562	PUM2
chr1	94354345	94354392	-	3'-UTR,intron-Distal	6.14814	21.82861	K562	LIN28B
chr1	94352308	94352437	-	3'-UTR,intron-Distal	4.01568	19.08639	K562	UPF1
chr1	94374422	94374573	-	intron-Distal,intron-Proximal	4.89261	15.24697	HepG2	EFTUD2
chr1	94369377	94369464	-	intron-Distal	5.72418	14.70731	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 59 entries

eCLIP assay for GCLM is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GCLM is not available on ENCORE database.
108 RBPs can affect the levels of GCLM.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GCLM is not available on ENCORE database.

108 RBPs can affect the gene expression of GCLM :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GCLM	ENSG00000023909.5	2371.18550	787.52110	1.59010	89.09160	87.27180	HepG2	SRFBP1
GCLM	ENSG00000023909.5	179.90270	677.22240	-1.91240	30.04620	28.22760	HepG2	EIF2S1
GCLM	ENSG00000023909.5	6063.23110	3373.95380	0.84550	24.53950	22.07550	K562	CELF1
GCLM	ENSG00000023909.5	1164.01050	490.40690	1.24700	21.52880	19.76780	HepG2	SF3B1
GCLM	ENSG00000023909.5	1304.52140	697.23080	0.90370	19.70470	18.58220	HepG2	RBM22
GCLM	ENSG00000023909.5	5095.89310	2993.78740	0.76730	14.63970	12.74560	K562	PUF60
GCLM	ENSG00000023909.5	1608.82930	555.48140	1.53410	12.92150	11.88620	HepG2	SRSF9
GCLM	ENSG00000023909.5	333.53060	709.34000	-1.08870	13.20140	11.78310	HepG2	HNRNPK
GCLM	ENSG00000023909.5	2319.41150	1704.98670	0.44390	11.65640	10.26880	K562	NSUN2
GCLM	ENSG00000023909.5	1093.82830	510.72790	1.09870	12.79950	10.26750	HepG2	HSPD1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 124 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GCLM is not available on ENCORE database.

6 RBPs can affect the splicing of GCLM :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GCLM	ENSG00000023909.5	chr1	-	94362173	94362409			94360169	94360284	94363394	94363454	-0.05200	0.00000	0.00004	excluded	K562	AQR
SE	GCLM	ENSG00000023909.5	chr1	-	94359444	94359646			94350760	94354715	94360169	94360284	0.07500	0.00000	0.00000	included	K562	HNRNPU
SE	GCLM	ENSG00000023909.5	chr1	-	94370078	94370144			94367140	94367225	94374593	94374966	-0.29000	0.00000	0.00010	excluded	K562	RBM15
MXE	GCLM	ENSG00000023909.5	chr1	-	94363394	94363454	94367140	94367225	94360169	94360284	94370078	94370144	-0.10500	0.00000	0.00003	2included	K562	AQR
SE	GCLM	ENSG00000023909.5	chr1	-	94370078	94370144			94367140	94367225	94374593	94374966	-0.22100	0.00006	0.00336	excluded	K562	AKAP8L
SE	GCLM	ENSG00000023909.5	chr1	-	94370078	94370144			94367140	94367225	94374593	94374966	-0.23900	0.00038	0.00957	excluded	K562	SF3B4
SE	GCLM	ENSG00000023909.5	chr1	-	94370078	94370144			94367140	94367225	94374593	94374966	-0.17400	0.00071	0.01284	excluded	K562	PUS1
A3SS	GCLM	ENSG00000023909.5	chr1	-	94370078	94370168			94370078	94370144	94374593	94374966	0.09600	0.01758	0.08545	longer	K562	AQR

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GCLM

General Information

Functions

Localization

Domains (AlphaFold: GCLM)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GCLM is not avaliable on ENCORE database.

28 proteins are bound to GCLM RNA:

eCLIP assay for GCLM is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GCLM is not available on ENCORE database.

108 RBPs can affect the gene expression of GCLM :

The Knockdown/knockout RNA-Seq assay for GCLM is not available on ENCORE database.

6 RBPs can affect the splicing of GCLM :

The Knockdown/knockout RNA-Seq assay for GCLM is not avaliable on ENCORE database.