EMP3

General Information

Gene Name : EMP3
Gene ID : ENSG00000142227.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: EMP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	EMP3	ENSG00000142227.10	94.26	94.70	94.48	ENCSR000AEF
HepG2	EMP3	ENSG00000142227.10	9.56	6.20	7.88	ENCSR985KAT
K562	EMP3	ENSG00000142227.10	240.92	207.29	224.10	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for EMP3 is not avaliable on ENCORE database.

Proteins bound to RNA

EMP3 RNA is bound by 14 proteins.

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eCLIP assay for EMP3 is not avaliable on ENCORE database.

14 proteins are bound to EMP3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	48833576	48833650	+	3'-UTR,CDS	3.74900	35.67654	K562	PABPC4
chr19	48833755	48833791	+	3'-UTR,CDS	4.86721	20.44705	K562	PABPC4
chr19	48830100	48830134	+	3'-UTR,5'-UTR,CDS,intron-Distal	3.55961	18.07613	K562	YBX3
chr19	48830112	48830153	+	CDS,intron-Distal	3.02649	17.24622	K562	DDX3X
chr19	48832652	48832738	+	3'-UTR,CDS	3.19122	16.71375	K562	PABPC4
chr19	48833641	48833696	+	3'-UTR,CDS	4.91891	16.57579	K562	SND1
chr19	48833579	48833641	+	3'-UTR,CDS	3.40042	16.19618	K562	SND1
chr19	48830134	48830151	+	CDS,intron-Distal	3.90450	16.10494	K562	YBX3
chr19	48833710	48833755	+	3'-UTR,CDS	4.31837	16.02177	K562	PABPC4
chr19	48833650	48833698	+	3'-UTR,CDS	3.93482	15.85580	K562	PABPC4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 36 entries

eCLIP assay for EMP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for EMP3 is not available on ENCORE database.
134 RBPs can affect the levels of EMP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for EMP3 is not available on ENCORE database.

134 RBPs can affect the gene expression of EMP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
EMP3	ENSG00000142227.6	563.80560	31.16700	4.17700	79.13320	75.86420	HepG2	G3BP1
EMP3	ENSG00000142227.6	641.02220	38.09020	4.07280	69.83750	67.76020	HepG2	AKAP1
EMP3	ENSG00000142227.6	747.44710	95.81420	2.96360	63.87510	61.93350	HepG2	ACO1
EMP3	ENSG00000142227.6	483.41570	31.34130	3.94700	61.45730	59.15990	HepG2	DDX6
EMP3	ENSG00000142227.6	1027.43940	102.96030	3.31880	58.77810	57.00560	HepG2	RBM22
EMP3	ENSG00000142227.6	572.00040	1851.74970	-1.69480	57.10320	54.20940	K562	POLR2G
EMP3	ENSG00000142227.6	749.52860	97.85020	2.93720	51.54140	49.36440	HepG2	SUPV3L1
EMP3	ENSG00000142227.6	481.43450	96.25780	2.32230	47.42200	44.90560	HepG2	AKAP8L
EMP3	ENSG00000142227.6	691.96240	2414.13630	-1.80270	46.95560	44.00110	K562	PCBP3
EMP3	ENSG00000142227.6	271.96450	49.60390	2.45480	33.21110	31.85640	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 152 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for EMP3 is not available on ENCORE database.

26 RBPs can affect the splicing of EMP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	EMP3	ENSG00000142227.6	chr19	+	48829247	48829310	48828837	48828867	48830086	48830179	0.06700	0.00000	included	K562	SRSF1
SE	EMP3	ENSG00000142227.6	chr19	+	48830086	48830179	48828581	48828867	48830777	48830921	-0.08100	0.00000	excluded	K562	SF3B4
SE	EMP3	ENSG00000142227.6	chr19	+	48830777	48830880	48830086	48830179	48832608	48832749	-0.06700	0.00000	excluded	K562	PRPF8
SE	EMP3	ENSG00000142227.6	chr19	+	48830086	48830179	48828581	48828867	48830777	48830921	-0.12200	0.00000	excluded	K562	XRCC6
SE	EMP3	ENSG00000142227.6	chr19	+	48830777	48830880	48830010	48830179	48832608	48832749	-0.09700	0.00000	excluded	K562	AQR
SE	EMP3	ENSG00000142227.6	chr19	+	48830086	48830179	48828581	48828867	48830777	48830921	-0.05600	0.00001	excluded	K562	FXR1
SE	EMP3	ENSG00000142227.6	chr19	+	48830777	48830921	48830086	48830179	48832608	48832749	-0.05900	0.00001	excluded	K562	PUS1
SE	EMP3	ENSG00000142227.6	chr19	+	48830777	48830921	48830086	48830179	48832608	48832749	-0.07500	0.00000	excluded	K562	EFTUD2
SE	EMP3	ENSG00000142227.6	chr19	+	48830086	48830179	48828581	48828867	48830777	48830921	-0.10900	0.00000	excluded	K562	U2AF1
SE	EMP3	ENSG00000142227.6	chr19	+	48830086	48830179	48828581	48828867	48830777	48830921	0.07500	0.00002	included	K562	HNRNPUL1

Showing 1 to 10 of 37 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

EMP3

General Information

Functions

Localization

Domains (AlphaFold: EMP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for EMP3 is not avaliable on ENCORE database.

14 proteins are bound to EMP3 RNA:

eCLIP assay for EMP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for EMP3 is not available on ENCORE database.

134 RBPs can affect the gene expression of EMP3 :

The Knockdown/knockout RNA-Seq assay for EMP3 is not available on ENCORE database.

26 RBPs can affect the splicing of EMP3 :

The Knockdown/knockout RNA-Seq assay for EMP3 is not avaliable on ENCORE database.