CHPT1

General Information

Gene Name : CHPT1
Gene ID : ENSG00000111666.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHPT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHPT1	ENSG00000111666.10	1.72	2.34	2.03	ENCSR000AEF
HepG2	CHPT1	ENSG00000111666.10	60.48	120.31	90.39	ENCSR985KAT
K562	CHPT1	ENSG00000111666.10	45.35	46.65	46.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHPT1 is not avaliable on ENCORE database.

Proteins bound to RNA

CHPT1 RNA is bound by 33 proteins.

CanvasJS.com

eCLIP assay for CHPT1 is not avaliable on ENCORE database.

33 proteins are bound to CHPT1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	102091632	102091689	+	5'-UTR,CDS,intron-Distal	5.07825	400.00000	HepG2	DDX3X
chr12	102091454	102091499	+	5'-UTR,intron-Distal	6.36607	400.00000	HepG2	DDX3X
chr12	102091499	102091568	+	5'-UTR,intron-Distal	4.94030	400.00000	HepG2	DDX3X
chr12	102091568	102091631	+	5'-UTR,intron-Distal	4.50110	400.00000	HepG2	DDX3X
chr12	102091689	102091744	+	CDS,intron-Distal	5.18515	81.64266	HepG2	DDX3X
chr12	102125836	102125878	+	intron-Distal	6.03895	32.47801	HepG2	QKI
chr12	102125819	102125836	+	intron-Distal	5.72930	28.59258	HepG2	QKI
chr12	102124285	102124355	+	5'-UTR,CDS,intron-Proximal	5.70592	27.00331	HepG2	U2AF2
chr12	102123425	102123534	+	intron-Distal	6.17823	25.07285	HepG2	CSTF2
chr12	102091786	102091822	+	CDS,intron-Distal	4.12680	24.20352	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 88 entries

eCLIP assay for CHPT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHPT1 is not available on ENCORE database.
98 RBPs can affect the levels of CHPT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CHPT1 is not available on ENCORE database.

98 RBPs can affect the gene expression of CHPT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHPT1	ENSG00000111666.6	391.86900	1812.26740	-2.20940	106.73310	103.67130	HepG2	DNAJC21
CHPT1	ENSG00000111666.6	993.00900	2574.88050	-1.37460	72.71080	70.67550	HepG2	SRSF9
CHPT1	ENSG00000111666.6	1126.45160	3761.40110	-1.73950	40.88050	39.17360	HepG2	AKAP1
CHPT1	ENSG00000111666.6	890.27760	1964.32180	-1.14170	32.39250	31.02200	HepG2	TIAL1
CHPT1	ENSG00000111666.6	398.31560	2030.18740	-2.34960	34.38480	30.71340	HepG2	NONO
CHPT1	ENSG00000111666.6	530.18480	1624.89610	-1.61580	34.56400	30.19780	K562	NONO
CHPT1	ENSG00000111666.6	3726.85300	2247.44750	0.72960	24.53170	22.78130	K562	DDX47
CHPT1	ENSG00000111666.6	3553.36280	2350.86310	0.59590	19.53160	18.16390	HepG2	PUS1
CHPT1	ENSG00000111666.6	1639.93470	3116.60750	-0.92630	17.68420	16.07750	HepG2	HNRNPK
CHPT1	ENSG00000111666.6	2103.98120	3351.28160	-0.67160	14.90710	13.42830	HepG2	PUM2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHPT1 is not available on ENCORE database.

23 RBPs can affect the splicing of CHPT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CHPT1	ENSG00000111666.6	chr12	+	102108281	102108404	102107867	102108015	102110505	102110590	-0.06100	0.00000	0.00008	excluded	K562	SRSF1
SE	CHPT1	ENSG00000111666.6	chr12	+	102113900	102114037	102110505	102110590	102116945	102117032	-0.16600	0.00000	0.00001	excluded	K562	PUS1
SE	CHPT1	ENSG00000111666.6	chr12	+	102113900	102114032	102110505	102110590	102116945	102117032	-0.06300	0.00000	0.00001	excluded	K562	UTP18
A5SS	CHPT1	ENSG00000111666.6	chr12	+	102120071	102120295	102120071	102120182	102122678	102122852	0.15800	0.00000	0.00006	longer	HepG2	SUPV3L1
A5SS	CHPT1	ENSG00000111666.6	chr12	+	102120071	102120275	102120071	102120182	102122678	102122852	0.26100	0.00000	0.00000	longer	K562	SUPV3L1
A5SS	CHPT1	ENSG00000111666.6	chr12	+	102120071	102120295	102120071	102120182	102122678	102122852	0.19600	0.00000	0.00310	longer	K562	WDR43
A5SS	CHPT1	ENSG00000111666.6	chr12	+	102120071	102120295	102120071	102120182	102122678	102122852	0.19600	0.00000	0.00010	longer	K562	RBM15
A5SS	CHPT1	ENSG00000111666.6	chr12	+	102120071	102120275	102120071	102120182	102122678	102122852	0.19100	0.00001	0.01435	longer	K562	WDR3
A5SS	CHPT1	ENSG00000111666.6	chr12	+	102120071	102120275	102120071	102120182	102122678	102122852	0.12900	0.00001	0.00569	longer	HepG2	DDX55
A5SS	CHPT1	ENSG00000111666.6	chr12	+	102120071	102120295	102120071	102120182	102122678	102122852	0.19200	0.00001	0.02235	longer	K562	NONO

Showing 1 to 10 of 33 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHPT1

General Information

Functions

Localization

Domains (AlphaFold: CHPT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHPT1 is not avaliable on ENCORE database.

33 proteins are bound to CHPT1 RNA:

eCLIP assay for CHPT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHPT1 is not available on ENCORE database.

98 RBPs can affect the gene expression of CHPT1 :

The Knockdown/knockout RNA-Seq assay for CHPT1 is not available on ENCORE database.

23 RBPs can affect the splicing of CHPT1 :

The Knockdown/knockout RNA-Seq assay for CHPT1 is not avaliable on ENCORE database.