CCDC58

General Information

Gene Name : CCDC58
Gene ID : ENSG00000160124.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCDC58)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC58	ENSG00000160124.9	150.50	120.02	135.26	ENCSR000AEF
HepG2	CCDC58	ENSG00000160124.9	56.30	175.84	116.07	ENCSR985KAT
K562	CCDC58	ENSG00000160124.9	116.70	124.60	120.65	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC58 is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC58 RNA is bound by 13 proteins.

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eCLIP assay for CCDC58 is not avaliable on ENCORE database.

13 proteins are bound to CCDC58 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	122085927	122086036	-	intron-Distal	5.25157	36.01335	HepG2	PCBP2
chr3	122101965	122102079	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.85338	22.46178	HepG2	PRPF8
chr3	122082358	122082463	-	intron-Distal	4.55241	11.10994	HepG2	SUGP2
chr3	122078642	122078682	-	3'-UTR,intron-Distal,intron-Proximal	4.20824	11.02630	K562	PABPC4
chr3	122090576	122090648	-	CDS,intron-Distal,intron-Proximal	3.96708	10.30883	K562	DDX3X
chr3	122089365	122089451	-	intron-Distal	4.73612	9.10156	HepG2	QKI
chr3	122078659	122078681	-	3'-UTR,intron-Distal,intron-Proximal	3.69855	8.41667	HepG2	DDX55
chr3	122082677	122082774	-	intron-Distal	5.24625	8.41240	HepG2	SUGP2
chr3	122078638	122078659	-	3'-UTR,intron-Distal,intron-Proximal	3.50426	7.90679	HepG2	DDX55
chr3	122094259	122094334	-	intron-Distal	3.52171	6.64740	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 25 entries

eCLIP assay for CCDC58 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC58 is not available on ENCORE database.
115 RBPs can affect the levels of CCDC58.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCDC58 is not available on ENCORE database.

115 RBPs can affect the gene expression of CCDC58 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC58	ENSG00000160124.5	228.44140	697.44730	-1.61030	32.87620	31.47920	HepG2	RBM22
CCDC58	ENSG00000160124.5	461.02910	952.55430	-1.04690	24.53700	22.65440	K562	UPF1
CCDC58	ENSG00000160124.5	439.89240	994.29360	-1.17650	22.11470	19.86580	K562	CPSF6
CCDC58	ENSG00000160124.5	453.34000	902.12460	-0.99270	20.15180	18.67340	HepG2	SRSF5
CCDC58	ENSG00000160124.5	606.46430	262.27620	1.20920	19.80100	18.29670	K562	FXR1
CCDC58	ENSG00000160124.5	459.69230	852.56010	-0.89110	18.81520	17.37000	HepG2	SMN1
CCDC58	ENSG00000160124.5	391.10400	784.86750	-1.00490	18.24060	17.06910	HepG2	PTBP1
CCDC58	ENSG00000160124.5	497.77450	898.36640	-0.85180	18.26830	16.57880	K562	NSUN2
CCDC58	ENSG00000160124.5	367.45540	904.73880	-1.29990	18.10440	16.57760	HepG2	NCBP2
CCDC58	ENSG00000160124.5	439.68400	949.31960	-1.11040	17.71580	15.63510	K562	GPKOW
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 134 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC58 is not available on ENCORE database.

20 RBPs can affect the splicing of CCDC58 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC58	ENSG00000160124.5	chr3	-	122087022	122087204			122081814	122081874	122090521	122090647	-0.10900	0.00000	0.00001	excluded	HepG2	U2AF2
A3SS	CCDC58	ENSG00000160124.5	chr3	-	122087022	122087204			122087022	122087169	122090521	122090647	0.05800	0.00000	0.00001	longer	K562	AQR
MXE	CCDC58	ENSG00000160124.5	chr3	-	122087022	122087169	122090521	122090647	122081814	122081874	122102020	122102078	0.20000	0.00000	0.00010	1included	K562	LIN28B
MXE	CCDC58	ENSG00000160124.5	chr3	-	122087022	122087169	122090521	122090647	122081814	122081874	122102020	122102078	0.20100	0.00000	0.00001	1included	HepG2	U2AF2
MXE	CCDC58	ENSG00000160124.5	chr3	-	122087022	122087169	122090521	122090647	122081814	122081874	122102020	122102078	0.17500	0.00000	0.00024	1included	HepG2	SUPV3L1
MXE	CCDC58	ENSG00000160124.5	chr3	-	122087022	122087169	122090521	122090647	122081814	122081874	122102020	122102078	0.16700	0.00003	0.00429	1included	K562	PHF6
MXE	CCDC58	ENSG00000160124.5	chr3	-	122087022	122087169	122090521	122090647	122081814	122081874	122102020	122102078	-0.17400	0.00004	0.02337	2included	HepG2	TRA2A
MXE	CCDC58	ENSG00000160124.5	chr3	-	122081814	122081874	122087022	122087169	122078634	122078766	122090521	122090647	0.13200	0.00004	0.00329	1included	HepG2	TIAL1
MXE	CCDC58	ENSG00000160124.5	chr3	-	122087022	122087169	122090521	122090647	122081814	122081874	122102020	122102078	-0.16900	0.00005	0.01250	2included	HepG2	SUB1
MXE	CCDC58	ENSG00000160124.5	chr3	-	122081814	122081874	122090521	122090647	122078437	122078766	122102020	122102078	-0.22800	0.00007	0.00225	2included	K562	PUS1

Showing 1 to 10 of 29 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCDC58

General Information

Functions

Localization

Domains (AlphaFold: CCDC58)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC58 is not avaliable on ENCORE database.

13 proteins are bound to CCDC58 RNA:

eCLIP assay for CCDC58 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC58 is not available on ENCORE database.

115 RBPs can affect the gene expression of CCDC58 :

The Knockdown/knockout RNA-Seq assay for CCDC58 is not available on ENCORE database.

20 RBPs can affect the splicing of CCDC58 :

The Knockdown/knockout RNA-Seq assay for CCDC58 is not avaliable on ENCORE database.