CCDC50

General Information

Gene Name : CCDC50
Gene ID : ENSG00000152492.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCDC50)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC50	ENSG00000152492.14	93.43	93.35	93.39	ENCSR000AEF
HepG2	CCDC50	ENSG00000152492.14	31.60	46.73	39.16	ENCSR985KAT
K562	CCDC50	ENSG00000152492.14	28.43	28.19	28.31	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC50 is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC50 RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for CCDC50 is not avaliable on ENCORE database.

19 proteins are bound to CCDC50 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	191098012	191098064	+	CDS,intron-Proximal	4.12770	15.30407	HepG2	BCLAF1
chr3	191097966	191098012	+	CDS	4.24130	14.68146	HepG2	BCLAF1
chr3	191047350	191047434	+	5'-UTR	4.09405	14.21431	HepG2	DDX3X
chr3	191106840	191106936	+	intron-Distal	5.83878	13.68181	HepG2	PTBP1
chr3	191097945	191098064	+	CDS,intron-Proximal	3.82624	13.31102	HepG2	GRWD1
chr3	191105620	191105778	+	intron-Distal	5.56386	11.64245	HepG2	QKI
chr3	191087756	191087826	+	CDS,intron-Proximal	3.44291	11.17783	HepG2	BCLAF1
chr3	191098474	191098517	+	CDS,intron-Proximal	3.14013	10.73945	HepG2	BCLAF1
chr3	191098627	191098722	+	CDS,intron-Proximal	3.51373	10.33948	HepG2	GRWD1
chr3	191087774	191087832	+	CDS,intron-Proximal	4.39720	10.18376	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 47 entries

eCLIP assay for CCDC50 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC50 is not available on ENCORE database.
102 RBPs can affect the levels of CCDC50.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCDC50 is not available on ENCORE database.

102 RBPs can affect the gene expression of CCDC50 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC50	ENSG00000152492.9	1137.30940	2455.37030	-1.11030	23.57280	22.04680	K562	AQR
CCDC50	ENSG00000152492.9	2033.57810	3282.61590	-0.69080	21.41250	20.28040	HepG2	SSB
CCDC50	ENSG00000152492.9	2568.21580	4004.73760	-0.64090	18.04720	16.73290	HepG2	ETF1
CCDC50	ENSG00000152492.9	1816.47220	3616.43250	-0.99340	16.51170	15.04840	HepG2	NCBP2
CCDC50	ENSG00000152492.9	1717.91380	3311.82830	-0.94700	16.29900	14.82660	HepG2	IGF2BP2
CCDC50	ENSG00000152492.9	2419.60920	3580.32180	-0.56530	15.13610	14.06160	HepG2	NELFE
CCDC50	ENSG00000152492.9	1745.68310	2619.46110	-0.58550	14.91270	13.62440	HepG2	CKAP4
CCDC50	ENSG00000152492.9	1415.64360	2381.44460	-0.75040	14.89060	13.57560	HepG2	HNRNPU
CCDC50	ENSG00000152492.9	2147.28570	3161.66120	-0.55820	14.77500	13.55330	HepG2	PCBP1
CCDC50	ENSG00000152492.9	1045.11750	1720.43100	-0.71910	15.35210	13.54510	K562	SF3A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 121 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC50 is not available on ENCORE database.

5 RBPs can affect the splicing of CCDC50 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC50	ENSG00000152492.9	chr3	+	191092850	191093378	191087707	191087825	191097947	191098063	0.26600	0.00000	0.00000	included	HepG2	U2AF1
SE	CCDC50	ENSG00000152492.9	chr3	+	191092850	191093378	191087707	191087825	191097947	191098063	0.06800	0.00000	0.00000	included	HepG2	U2AF2
SE	CCDC50	ENSG00000152492.9	chr3	+	191092850	191093378	191087707	191087825	191097947	191098063	0.10400	0.00000	0.00000	included	HepG2	SFPQ
SE	CCDC50	ENSG00000152492.9	chr3	+	191092850	191093378	191087707	191087825	191097947	191098063	0.07600	0.00000	0.00000	included	K562	U2AF1
SE	CCDC50	ENSG00000152492.9	chr3	+	191100534	191100614	191098616	191098721	191107284	191107391	-0.16500	0.00000	0.00000	excluded	K562	HNRNPC
SE	CCDC50	ENSG00000152492.9	chr3	+	191092850	191093378	191087707	191087825	191097947	191098063	0.07700	0.00003	0.00243	included	K562	SF3B1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCDC50

General Information

Functions

Localization

Domains (AlphaFold: CCDC50)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC50 is not avaliable on ENCORE database.

19 proteins are bound to CCDC50 RNA:

eCLIP assay for CCDC50 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC50 is not available on ENCORE database.

102 RBPs can affect the gene expression of CCDC50 :

The Knockdown/knockout RNA-Seq assay for CCDC50 is not available on ENCORE database.

5 RBPs can affect the splicing of CCDC50 :

The Knockdown/knockout RNA-Seq assay for CCDC50 is not avaliable on ENCORE database.