ATAD1

General Information

Gene Name : ATAD1
Gene ID : ENSG00000138138.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATAD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATAD1	ENSG00000138138.13	35.86	29.44	32.65	ENCSR000AEF
HepG2	ATAD1	ENSG00000138138.13	13.18	21.85	17.52	ENCSR985KAT
K562	ATAD1	ENSG00000138138.13	15.62	18.02	16.82	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATAD1 is not avaliable on ENCORE database.

Proteins bound to RNA

ATAD1 RNA is bound by 14 proteins.

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eCLIP assay for ATAD1 is not avaliable on ENCORE database.

14 proteins are bound to ATAD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	89526519	89526571	-	intron-Distal	4.89517	8.83942	HepG2	HNRNPC
chr10	89513962	89514102	-	3'-UTR,intron-Distal,intron-Proximal	3.92406	8.75659	K562	PUM2
chr10	89518119	89518170	-	intron-Distal	4.38853	7.98209	HepG2	U2AF2
chr10	89518021	89518094	-	intron-Distal	4.32839	7.98209	HepG2	U2AF2
chr10	89514385	89514424	-	3'-UTR,intron-Distal	4.42879	7.91848	K562	PUM2
chr10	89514015	89514114	-	3'-UTR,intron-Distal	4.09841	6.86504	K562	TARDBP
chr10	89550138	89550187	-	CDS,intron-Distal	5.02688	6.58593	HepG2	BCLAF1
chr10	89517874	89517951	-	intron-Distal	3.24446	6.23972	K562	KHSRP
chr10	89552412	89552494	-	CDS,intron-Distal,intron-Proximal	4.28503	6.22576	HepG2	BCLAF1
chr10	89514171	89514198	-	3'-UTR,intron-Distal	4.43647	6.21733	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 33 entries

eCLIP assay for ATAD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATAD1 is not available on ENCORE database.
99 RBPs can affect the levels of ATAD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATAD1 is not available on ENCORE database.

99 RBPs can affect the gene expression of ATAD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATAD1	ENSG00000138138.9	3260.23910	1627.06320	1.00260	46.92040	45.51810	HepG2	SRFBP1
ATAD1	ENSG00000138138.9	808.24100	1412.65140	-0.80550	19.96570	18.86110	HepG2	SSB
ATAD1	ENSG00000138138.9	2250.51170	1440.57570	0.64350	13.67070	12.69340	HepG2	RBM22
ATAD1	ENSG00000138138.9	521.39080	993.98520	-0.93090	13.86240	12.60820	K562	HNRNPC
ATAD1	ENSG00000138138.9	602.16850	1191.11390	-0.98410	13.47800	11.29250	HepG2	RBM27
ATAD1	ENSG00000138138.9	845.30760	1661.87550	-0.97530	12.59470	11.25900	HepG2	EIF4A3
ATAD1	ENSG00000138138.9	1143.72540	1721.58880	-0.59000	11.82070	10.85220	HepG2	NELFE
ATAD1	ENSG00000138138.9	925.75870	1676.64440	-0.85690	11.47420	10.16340	HepG2	FXR1
ATAD1	ENSG00000138138.9	984.38370	1442.92040	-0.55170	10.46100	9.17840	K562	UPF1
ATAD1	ENSG00000138138.9	767.65620	1337.69460	-0.80120	10.71090	9.16540	K562	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATAD1 is not available on ENCORE database.

3 RBPs can affect the splicing of ATAD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATAD1	ENSG00000138138.9	chr10	-	89519457	89519544			89516545	89516679	89527429	89527480	0.10300	0.00000	0.00003	included	HepG2	IGF2BP3
A3SS	ATAD1	ENSG00000138138.9	chr10	-	89550066	89550275			89550066	89550187	89552413	89552538	0.07700	0.00000	0.00000	longer	K562	AQR
A3SS	ATAD1	ENSG00000138138.9	chr10	-	89544308	89544552			89544308	89544427	89550066	89550218	0.08100	0.00000	0.00000	longer	K562	AQR
A3SS	ATAD1	ENSG00000138138.9	chr10	-	89552413	89552535			89552413	89552512	89574194	89574639	0.09800	0.00000	0.00000	longer	K562	AQR
A3SS	ATAD1	ENSG00000138138.9	chr10	-	89516545	89516701			89516545	89516679	89527429	89527480	0.09600	0.00000	0.00000	longer	K562	AQR
MXE	ATAD1	ENSG00000138138.9	chr10	-	89536077	89536184	89544226	89544453	89530708	89530798	89550066	89550187	0.09800	0.00000	0.00001	1included	K562	AQR
MXE	ATAD1	ENSG00000138138.9	chr10	-	89536077	89536184	89544226	89544403	89530708	89530798	89550066	89550187	0.07100	0.00003	0.00046	1included	K562	AQR
SE	ATAD1	ENSG00000138138.9	chr10	-	89551060	89551209			89550066	89550187	89552413	89552514	0.14200	0.00004	0.00115	included	K562	HNRNPC
SE	ATAD1	ENSG00000138138.9	chr10	-	89536077	89536184			89530708	89530798	89544226	89544453	-0.06300	0.00007	0.00133	excluded	K562	AQR
MXE	ATAD1	ENSG00000138138.9	chr10	-	89536077	89536184	89544226	89544470	89530708	89530798	89550066	89550187	0.06700	0.00008	0.00097	1included	K562	AQR

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATAD1

General Information

Functions

Localization

Domains (AlphaFold: ATAD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATAD1 is not avaliable on ENCORE database.

14 proteins are bound to ATAD1 RNA:

eCLIP assay for ATAD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATAD1 is not available on ENCORE database.

99 RBPs can affect the gene expression of ATAD1 :

The Knockdown/knockout RNA-Seq assay for ATAD1 is not available on ENCORE database.

3 RBPs can affect the splicing of ATAD1 :

The Knockdown/knockout RNA-Seq assay for ATAD1 is not avaliable on ENCORE database.