VPS13C

General Information

Gene Name : VPS13C
Gene ID : ENSG00000129003.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VPS13C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VPS13C	ENSG00000129003.17	37.25	25.32	31.29	ENCSR000AEF
HepG2	VPS13C	ENSG00000129003.17	7.92	12.23	10.07	ENCSR985KAT
K562	VPS13C	ENSG00000129003.17	8.23	9.00	8.62	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VPS13C is not avaliable on ENCORE database.

Proteins bound to RNA

VPS13C RNA is bound by 34 proteins.

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eCLIP assay for VPS13C is not avaliable on ENCORE database.

34 proteins are bound to VPS13C RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	62157755	62157897	-	intron-Distal	6.42623	80.40723	K562	HNRNPL
chr15	62157711	62157799	-	intron-Distal	5.49124	54.41662	K562	AGGF1
chr15	62157709	62157753	-	intron-Distal	5.96081	51.67848	HepG2	HNRNPL
chr15	62157921	62158008	-	intron-Distal	5.82551	51.22793	HepG2	HNRNPL
chr15	62157641	62157703	-	intron-Distal	7.58669	45.64815	K562	AGGF1
chr15	62157637	62157703	-	intron-Distal	6.12579	42.43511	K562	HNRNPL
chr15	62170924	62170932	-	CDS,intron-Distal	4.66097	36.56742	K562	RPS3
chr15	62157575	62157626	-	intron-Distal	5.80751	36.29949	K562	AGGF1
chr15	62170904	62170924	-	CDS,intron-Distal	4.52346	35.61179	K562	RPS3
chr15	62157727	62157755	-	intron-Distal	6.82387	35.25070	K562	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 227 entries

eCLIP assay for VPS13C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VPS13C is not available on ENCORE database.
107 RBPs can affect the levels of VPS13C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VPS13C is not available on ENCORE database.

107 RBPs can affect the gene expression of VPS13C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VPS13C	ENSG00000129003.11	2965.99250	1369.17220	1.11510	40.65980	38.84100	HepG2	TAF15
VPS13C	ENSG00000129003.11	2574.48140	1459.34390	0.81890	26.03420	24.53560	HepG2	SF3B4
VPS13C	ENSG00000129003.11	2599.02080	1523.24610	0.77070	24.89180	23.78300	HepG2	SRSF1
VPS13C	ENSG00000129003.11	2468.74700	1401.70990	0.81650	24.66810	23.34350	HepG2	PTBP1
VPS13C	ENSG00000129003.11	2043.65480	1239.24780	0.72160	20.77490	19.51980	HepG2	SRSF9
VPS13C	ENSG00000129003.11	1441.99130	2374.00580	-0.71930	19.75640	18.35610	K562	AGGF1
VPS13C	ENSG00000129003.11	4195.46670	2928.47940	0.51860	16.37740	15.42570	HepG2	SRFBP1
VPS13C	ENSG00000129003.11	1424.70750	2386.98090	-0.74450	16.83530	15.35620	K562	RBM15
VPS13C	ENSG00000129003.11	2565.27660	1377.75030	0.89670	14.99140	13.48580	HepG2	RBM25
VPS13C	ENSG00000129003.11	1168.78370	2140.62000	-0.87300	15.50920	13.32140	K562	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 123 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VPS13C is not available on ENCORE database.

5 RBPs can affect the splicing of VPS13C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	VPS13C	ENSG00000129003.11	chr15	-	62155638	62155798			62155638	62155727	62160857	62160972	0.30600	0.00004	0.00642	longer	HepG2	SF3A3
SE	VPS13C	ENSG00000129003.11	chr15	-	62176326	62176468			62174794	62174935	62182363	62182599	-0.14700	0.00193	0.07367	excluded	K562	HNRNPK
SE	VPS13C	ENSG00000129003.11	chr15	-	62176326	62176468			62174794	62174935	62182363	62182599	-0.25800	0.00206	0.03738	excluded	HepG2	U2AF1
SE	VPS13C	ENSG00000129003.11	chr15	-	62198067	62198186			62182363	62182599	62199462	62199589	0.12800	0.00213	0.03845	included	K562	SRSF1
MXE	VPS13C	ENSG00000129003.11	chr15	-	62254947	62255051	62256033	62256150	62254569	62254737	62256897	62257060	0.16700	0.00334	0.02187	1included	HepG2	U2AF2
SE	VPS13C	ENSG00000129003.11	chr15	-	62149044	62149132			62148484	62148608	62155638	62155727	0.05600	0.00585	0.08164	included	K562	U2AF2

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VPS13C

General Information

Functions

Localization

Domains (AlphaFold: VPS13C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VPS13C is not avaliable on ENCORE database.

34 proteins are bound to VPS13C RNA:

eCLIP assay for VPS13C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VPS13C is not available on ENCORE database.

107 RBPs can affect the gene expression of VPS13C :

The Knockdown/knockout RNA-Seq assay for VPS13C is not available on ENCORE database.

5 RBPs can affect the splicing of VPS13C :

The Knockdown/knockout RNA-Seq assay for VPS13C is not avaliable on ENCORE database.