TCP1

General Information

Gene Name : TCP1
Gene ID : ENSG00000120438.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TCP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TCP1	ENSG00000120438.11	253.42	199.86	226.64	ENCSR000AEF
HepG2	TCP1	ENSG00000120438.11	262.25	348.11	305.18	ENCSR985KAT
K562	TCP1	ENSG00000120438.11	415.75	443.49	429.62	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TCP1 is not avaliable on ENCORE database.

Proteins bound to RNA

TCP1 RNA is bound by 35 proteins.

CanvasJS.com

eCLIP assay for TCP1 is not avaliable on ENCORE database.

35 proteins are bound to TCP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	160200010	160200036	-	3'-UTR,intron-Distal,intron-Proximal	5.59353	400.00000	K562	PABPC4
chr6	160200036	160200059	-	3'-UTR,intron-Distal	4.76612	400.00000	K562	PABPC4
chr6	160210520	160210628	-	5'-UTR,intron-Distal,intron-Proximal	5.50415	400.00000	HepG2	DDX3X
chr6	160210491	160210639	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.51101	400.00000	K562	DDX3X
chr6	160201343	160201345	-	intron-Distal,intron-Proximal	4.37118	400.00000	HepG2	DKC1
chr6	160201373	160201407	-	intron-Distal,intron-Proximal	4.52790	400.00000	HepG2	DKC1
chr6	160201337	160201343	-	intron-Distal,intron-Proximal	4.42407	400.00000	HepG2	DKC1
chr6	160201352	160201359	-	intron-Distal,intron-Proximal	4.45440	400.00000	HepG2	DKC1
chr6	160201285	160201288	-	intron-Distal	3.91680	400.00000	HepG2	DKC1
chr6	160201370	160201373	-	intron-Distal,intron-Proximal	4.51941	400.00000	HepG2	DKC1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 163 entries

eCLIP assay for TCP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TCP1 is not available on ENCORE database.
123 RBPs can affect the levels of TCP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TCP1 is not available on ENCORE database.

123 RBPs can affect the gene expression of TCP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TCP1	ENSG00000120438.7	2062.11840	5238.14900	-1.34490	99.96130	97.43280	HepG2	PUS1
TCP1	ENSG00000120438.7	1836.65530	4340.91580	-1.24090	37.54940	35.71330	HepG2	HNRNPA1
TCP1	ENSG00000120438.7	11332.09990	18116.29010	-0.67690	33.65160	31.46930	K562	UPF1
TCP1	ENSG00000120438.7	4143.12700	7721.60170	-0.89820	30.01460	26.73360	K562	EIF4B
TCP1	ENSG00000120438.7	3258.10350	5348.80310	-0.71520	25.04900	23.71700	HepG2	PTBP1
TCP1	ENSG00000120438.7	4720.27860	6968.62230	-0.56200	25.14200	23.43770	HepG2	SLBP
TCP1	ENSG00000120438.7	5353.47670	7677.99570	-0.52030	22.44320	20.70010	HepG2	DAZAP1
TCP1	ENSG00000120438.7	13918.21700	8917.09440	0.64220	22.21340	20.61360	K562	FXR1
TCP1	ENSG00000120438.7	13085.02140	17085.67420	-0.38490	21.37160	19.58270	K562	NSUN2
TCP1	ENSG00000120438.7	2173.43090	5480.76020	-1.33440	21.20260	19.42580	HepG2	EIF4B
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 154 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TCP1 is not available on ENCORE database.

13 RBPs can affect the splicing of TCP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	is_included	Cell Line	Affected by RBP
SE	TCP1	ENSG00000120438.7	chr6	-	160209089	160209175			160208774	160208903	160210436	160210704	-0.08300	excluded	K562	SF3B4
SE	TCP1	ENSG00000120438.7	chr6	-	160206931	160207029			160204972	160205099	160208774	160208975	-0.09900	excluded	K562	AQR
SE	TCP1	ENSG00000120438.7	chr6	-	160206931	160207052			160206417	160206528	160208774	160208934	-0.07600	excluded	K562	PUS1
SE	TCP1	ENSG00000120438.7	chr6	-	160209089	160209175			160208774	160208903	160210436	160210704	-0.15500	excluded	K562	PUS1
SE	TCP1	ENSG00000120438.7	chr6	-	160209089	160209175			160208774	160208903	160210436	160210704	-0.08000	excluded	HepG2	SF3A3
SE	TCP1	ENSG00000120438.7	chr6	-	160209089	160209175			160208774	160208903	160210436	160210704	-0.11000	excluded	K562	RBM15
A3SS	TCP1	ENSG00000120438.7	chr6	-	160200658	160200847			160200658	160200822	160200926	160201112	0.09800	longer	K562	AQR
A3SS	TCP1	ENSG00000120438.7	chr6	-	160200947	160201190			160200947	160201119	160201474	160201654	0.07100	longer	K562	AQR
A3SS	TCP1	ENSG00000120438.7	chr6	-	160208774	160208934			160208774	160208903	160209089	160209163	0.07900	longer	K562	PUS1
MXE	TCP1	ENSG00000120438.7	chr6	-	160206931	160207029	160208774	160208903	160206417	160206528	160210436	160210704	0.06600	1included	K562	AQR

Showing 1 to 10 of 35 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TCP1

General Information

Functions

Localization

Domains (AlphaFold: TCP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TCP1 is not avaliable on ENCORE database.

35 proteins are bound to TCP1 RNA:

eCLIP assay for TCP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TCP1 is not available on ENCORE database.

123 RBPs can affect the gene expression of TCP1 :

The Knockdown/knockout RNA-Seq assay for TCP1 is not available on ENCORE database.

13 RBPs can affect the splicing of TCP1 :

The Knockdown/knockout RNA-Seq assay for TCP1 is not avaliable on ENCORE database.