SNHG1

General Information

Gene Name : SNHG1
Gene ID : ENSG00000255717.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNHG1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNHG1	ENSG00000255717.6	333.55	305.80	319.68	ENCSR000AEF
HepG2	SNHG1	ENSG00000255717.6	167.96	259.68	213.82	ENCSR985KAT
K562	SNHG1	ENSG00000255717.6	432.78	497.99	465.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNHG1 is not avaliable on ENCORE database.

Proteins bound to RNA

SNHG1 RNA is bound by 38 proteins.

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eCLIP assay for SNHG1 is not avaliable on ENCORE database.

38 proteins are bound to SNHG1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	62622108	62622114	-	intron-Distal,intron-Proximal	6.68542	400.00000	HepG2	NOLC1
chr11	62622124	62622141	-	intron-Distal,intron-Proximal	3.13048	400.00000	HepG2	DKC1
chr11	62621980	62622002	-	intron-Distal,intron-Proximal	5.24651	400.00000	K562	EFTUD2
chr11	62622141	62622159	-	intron-Distal,intron-Proximal	4.39122	400.00000	HepG2	DKC1
chr11	62622098	62622103	-	intron-Distal,intron-Proximal	4.34555	400.00000	K562	HNRNPUL1
chr11	62622806	62622831	-	intron-Distal,intron-Proximal	3.36491	400.00000	HepG2	LARP7
chr11	62622834	62622838	-	intron-Distal,intron-Proximal	3.58407	400.00000	HepG2	NOLC1
chr11	62620451	62620464	-	intron-Distal,intron-Proximal	4.22232	400.00000	K562	AATF
chr11	62620426	62620438	-	intron-Distal	3.81975	400.00000	K562	AATF
chr11	62622775	62622804	-	intron-Distal,intron-Proximal	4.00283	400.00000	HepG2	LARP7
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 277 entries

eCLIP assay for SNHG1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNHG1 is not available on ENCORE database.
150 RBPs can affect the levels of SNHG1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNHG1 is not available on ENCORE database.

150 RBPs can affect the gene expression of SNHG1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNHG1	ENSG00000255717.2	23022.42310	7120.03930	1.69300	100.80320	96.74360	K562	U2AF2
SNHG1	ENSG00000255717.2	32660.64440	10022.31690	1.70420	74.83820	72.16610	K562	AQR
SNHG1	ENSG00000255717.2	35873.43120	11361.22760	1.65870	65.11310	62.38470	K562	PUS1
SNHG1	ENSG00000255717.2	17049.24350	8802.07640	0.95370	55.16220	52.61090	K562	DDX47
SNHG1	ENSG00000255717.2	14062.39130	5890.79680	1.25520	49.83010	47.45450	K562	HNRNPC
SNHG1	ENSG00000255717.2	3460.83950	1727.16920	1.00260	46.50780	44.49840	HepG2	UTP3
SNHG1	ENSG00000255717.2	19135.95970	11008.99540	0.79750	43.65020	41.43670	K562	AGGF1
SNHG1	ENSG00000255717.2	549.21400	1865.27200	-1.76390	39.50720	37.43070	HepG2	DDX3X
SNHG1	ENSG00000255717.2	20393.65380	11069.17470	0.88150	35.37140	33.16000	K562	RBM15
SNHG1	ENSG00000255717.2	1591.71220	2918.67940	-0.87470	31.12310	29.26130	HepG2	AUH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 179 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNHG1 is not available on ENCORE database.

63 RBPs can affect the splicing of SNHG1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SNHG1	ENSG00000255717.2	chr11	-	62622359	62622410	62621990	62622023	62622604	62622708	0.16400	0.00044	included	HepG2	G3BP1
SE	SNHG1	ENSG00000255717.2	chr11	-	62621489	62621536	62621272	62621305	62621990	62622023	0.13600	0.00000	included	K562	SRSF1
SE	SNHG1	ENSG00000255717.2	chr11	-	62621489	62621536	62621272	62621305	62621990	62622023	-0.24500	0.00000	excluded	K562	SF3B4
SE	SNHG1	ENSG00000255717.2	chr11	-	62622359	62622688	62621839	62622023	62622895	62622960	-0.07900	0.00000	excluded	K562	SF3B4
SE	SNHG1	ENSG00000255717.2	chr11	-	62621489	62621536	62621272	62621305	62621990	62622023	-0.16300	0.00001	excluded	K562	PRPF8
SE	SNHG1	ENSG00000255717.2	chr11	-	62622604	62622688	62621990	62622023	62622895	62622951	-0.10700	0.00000	excluded	K562	PRPF8
SE	SNHG1	ENSG00000255717.2	chr11	-	62621489	62621536	62621272	62621305	62621990	62622023	-0.36600	0.00001	excluded	HepG2	U2AF1
SE	SNHG1	ENSG00000255717.2	chr11	-	62622359	62622410	62621990	62622023	62622604	62622704	-0.64700	0.00000	excluded	HepG2	U2AF1
SE	SNHG1	ENSG00000255717.2	chr11	-	62622359	62622410	62621990	62622023	62622604	62622688	-0.42200	0.00000	excluded	HepG2	PRPF8
SE	SNHG1	ENSG00000255717.2	chr11	-	62621489	62621536	62621272	62621305	62621990	62622023	-0.14300	0.00019	excluded	K562	AKAP8L

Showing 1 to 10 of 620 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNHG1

General Information

Functions

Localization

Domains (AlphaFold: SNHG1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNHG1 is not avaliable on ENCORE database.

38 proteins are bound to SNHG1 RNA:

eCLIP assay for SNHG1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNHG1 is not available on ENCORE database.

150 RBPs can affect the gene expression of SNHG1 :

The Knockdown/knockout RNA-Seq assay for SNHG1 is not available on ENCORE database.

63 RBPs can affect the splicing of SNHG1 :

The Knockdown/knockout RNA-Seq assay for SNHG1 is not avaliable on ENCORE database.