RAD50

General Information

Gene Name : RAD50
Gene ID : ENSG00000113522.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RAD50)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RAD50	ENSG00000113522.13	33.42	31.88	32.65	ENCSR000AEF
HepG2	RAD50	ENSG00000113522.13	17.10	19.34	18.22	ENCSR985KAT
K562	RAD50	ENSG00000113522.13	37.85	36.57	37.21	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RAD50 is not avaliable on ENCORE database.

Proteins bound to RNA

RAD50 RNA is bound by 20 proteins.

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eCLIP assay for RAD50 is not avaliable on ENCORE database.

20 proteins are bound to RAD50 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	131923635	131923782	+	5'-UTR,CDS,intron-Proximal	4.14123	32.61117	K562	UCHL5
chr5	131923721	131923784	+	5'-UTR,CDS,intron-Proximal	5.13194	21.23661	HepG2	BCLAF1
chr5	131939099	131939174	+	3'-UTR,CDS	6.23678	17.40432	HepG2	BCLAF1
chr5	131973771	131973872	+	3'-UTR,CDS,intron-Proximal	4.65230	16.88216	HepG2	BCLAF1
chr5	131911515	131911593	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.74644	15.51821	HepG2	BCLAF1
chr5	131953914	131953983	+	3'-UTR,CDS	4.28728	15.36400	K562	UCHL5
chr5	131915437	131915516	+	intron-Distal,intron-Proximal	4.38307	15.04708	K562	KHSRP
chr5	131953861	131953954	+	3'-UTR,CDS	4.48590	14.73538	K562	ZNF622
chr5	131915399	131915437	+	intron-Distal	5.57873	14.70731	K562	KHSRP
chr5	131915642	131915733	+	5'-UTR,CDS	4.23298	14.55928	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 97 entries

eCLIP assay for RAD50 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RAD50 is not available on ENCORE database.
106 RBPs can affect the levels of RAD50.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RAD50 is not available on ENCORE database.

106 RBPs can affect the gene expression of RAD50 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RAD50	ENSG00000113522.9	1185.10320	3428.29880	-1.53250	57.98640	55.05510	K562	SRSF1
RAD50	ENSG00000113522.9	1086.77280	2137.81690	-0.97610	34.77750	33.01280	HepG2	UTP3
RAD50	ENSG00000113522.9	1584.80680	2435.30310	-0.61980	20.69450	19.54030	HepG2	ZNF622
RAD50	ENSG00000113522.9	2043.62470	3666.93190	-0.84340	18.92000	17.55840	K562	AGGF1
RAD50	ENSG00000113522.9	2132.17580	3784.56940	-0.82780	14.98540	13.76310	K562	PUS1
RAD50	ENSG00000113522.9	2914.22590	1943.79560	0.58410	13.96000	12.37000	HepG2	EIF4G1
RAD50	ENSG00000113522.9	1610.03520	2524.33290	-0.64880	14.53040	11.48920	K562	DDX6
RAD50	ENSG00000113522.9	3308.40990	2407.58720	0.45840	11.63070	10.79400	HepG2	SRFBP1
RAD50	ENSG00000113522.9	2963.27240	4433.71420	-0.58130	10.63060	9.07760	K562	CPSF6
RAD50	ENSG00000113522.9	2243.20460	1582.25280	0.50350	10.08940	8.74690	HepG2	PRPF4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 122 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RAD50 is not available on ENCORE database.

8 RBPs can affect the splicing of RAD50 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RAD50	ENSG00000113522.9	chr5	+	131971721	131971808			131953761	131953986	131972806	131972892	0.20500	0.00000	0.00000	included	HepG2	U2AF1
A3SS	RAD50	ENSG00000113522.9	chr5	+	131972784	131972892			131972806	131972892	131953761	131953986	0.10300	0.00000	0.00000	longer	K562	AQR
MXE	RAD50	ENSG00000113522.9	chr5	+	131930560	131930736	131930795	131930893	131927568	131927726	131931264	131931502	-0.09000	0.00000	0.00014	2included	K562	UTP18
MXE	RAD50	ENSG00000113522.9	chr5	+	131930560	131930736	131930795	131930965	131927568	131927726	131931264	131931502	-0.16600	0.00000	0.00000	2included	K562	U2AF2
MXE	RAD50	ENSG00000113522.9	chr5	+	131930560	131930736	131930795	131930893	131927568	131927726	131931264	131931460	-0.24200	0.00000	0.00000	2included	K562	U2AF2
MXE	RAD50	ENSG00000113522.9	chr5	+	131930560	131930736	131930795	131930893	131926915	131927098	131931264	131931502	-0.20000	0.00000	0.00000	2included	HepG2	U2AF2
MXE	RAD50	ENSG00000113522.9	chr5	+	131930560	131930736	131930795	131930965	131927568	131927726	131931264	131931502	-0.14900	0.00000	0.00000	2included	HepG2	U2AF2
MXE	RAD50	ENSG00000113522.9	chr5	+	131930560	131930736	131930795	131930893	131927568	131927726	131931264	131931502	-0.22700	0.00000	0.00000	2included	HepG2	U2AF2
SE	RAD50	ENSG00000113522.9	chr5	+	131971721	131971808			131953761	131953986	131972806	131972892	0.06100	0.00001	0.00033	included	K562	U2AF1
MXE	RAD50	ENSG00000113522.9	chr5	+	131930560	131930736	131930795	131930965	131927568	131927726	131931264	131931502	-0.12100	0.00005	0.00178	2included	HepG2	U2AF1

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RAD50

General Information

Functions

Localization

Domains (AlphaFold: RAD50)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RAD50 is not avaliable on ENCORE database.

20 proteins are bound to RAD50 RNA:

eCLIP assay for RAD50 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RAD50 is not available on ENCORE database.

106 RBPs can affect the gene expression of RAD50 :

The Knockdown/knockout RNA-Seq assay for RAD50 is not available on ENCORE database.

8 RBPs can affect the splicing of RAD50 :

The Knockdown/knockout RNA-Seq assay for RAD50 is not avaliable on ENCORE database.