NUCKS1

General Information

Gene Name : NUCKS1
Gene ID : ENSG00000069275.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NUCKS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NUCKS1	ENSG00000069275.12	82.25	67.00	74.62	ENCSR000AEF
HepG2	NUCKS1	ENSG00000069275.12	79.80	106.67	93.23	ENCSR985KAT
K562	NUCKS1	ENSG00000069275.12	120.60	119.09	119.84	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NUCKS1 is not avaliable on ENCORE database.

Proteins bound to RNA

NUCKS1 RNA is bound by 58 proteins.

CanvasJS.com

eCLIP assay for NUCKS1 is not avaliable on ENCORE database.

58 proteins are bound to NUCKS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	205683134	205683202	-	3'-UTR,intron-Distal	5.80819	400.00000	K562	PUM2
chr1	205683338	205683408	-	3'-UTR,intron-Distal	5.14844	400.00000	K562	FAM120A
chr1	205719088	205719162	-	5'-UTR,CDS,intron-Distal	3.13835	400.00000	K562	GEMIN5
chr1	205719112	205719162	-	5'-UTR,intron-Distal	5.69422	400.00000	K562	ZNF622
chr1	205719084	205719112	-	5'-UTR,CDS,intron-Distal	5.51214	400.00000	K562	ZNF622
chr1	205719099	205719117	-	5'-UTR,CDS,intron-Distal	5.50386	400.00000	K562	UCHL5
chr1	205719112	205719156	-	5'-UTR,intron-Distal	5.29051	400.00000	K562	GTF2F1
chr1	205719117	205719153	-	5'-UTR,intron-Distal	5.21481	400.00000	K562	UCHL5
chr1	205719242	205719298	-	5'-UTR,intron-Distal	4.64276	80.97054	K562	UCHL5
chr1	205689634	205689698	-	CDS,intron-Distal	5.09903	76.68875	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 333 entries

eCLIP assay for NUCKS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NUCKS1 is not available on ENCORE database.
167 RBPs can affect the levels of NUCKS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NUCKS1 is not available on ENCORE database.

167 RBPs can affect the gene expression of NUCKS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NUCKS1	ENSG00000069275.12	1356.72170	5948.28690	-2.13230	215.66850	211.98150	HepG2	UTP3
NUCKS1	ENSG00000069275.12	3575.73440	10149.30310	-1.50510	149.79670	147.56440	HepG2	SRFBP1
NUCKS1	ENSG00000069275.12	2642.57360	6776.01770	-1.35850	137.13910	134.92360	HepG2	ZNF622
NUCKS1	ENSG00000069275.12	2344.41630	6069.44960	-1.37230	134.03120	130.51200	HepG2	ILF2
NUCKS1	ENSG00000069275.12	1776.72790	6004.73960	-1.75690	80.08650	77.03680	HepG2	MSI2
NUCKS1	ENSG00000069275.12	2385.54550	6581.45640	-1.46410	50.16140	48.23940	HepG2	BOP1
NUCKS1	ENSG00000069275.12	4039.03870	8075.34430	-0.99950	48.79950	46.78580	HepG2	CELF1
NUCKS1	ENSG00000069275.12	2953.51260	5279.40040	-0.83790	48.72310	46.26970	HepG2	DNAJC2
NUCKS1	ENSG00000069275.12	2312.15270	6370.92750	-1.46230	47.52950	45.22860	HepG2	TARDBP
NUCKS1	ENSG00000069275.12	3060.20720	5825.27300	-0.92870	46.68940	44.74830	HepG2	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 216 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NUCKS1 is not available on ENCORE database.

11 RBPs can affect the splicing of NUCKS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	NUCKS1	ENSG00000069275.12	chr1	-	205698699	205698798			205696827	205696933	205719084	205719404	-0.05100	0.00000	excluded	K562	AQR
SE	NUCKS1	ENSG00000069275.12	chr1	-	205696827	205696933			205689628	205689781	205719084	205719404	-0.72100	0.00015	excluded	K562	PUS1
A3SS	NUCKS1	ENSG00000069275.12	chr1	-	205688654	205688885			205688654	205688804	205689628	205689781	0.09800	0.00000	longer	K562	AQR
A3SS	NUCKS1	ENSG00000069275.12	chr1	-	205698699	205698798			205698699	205698749	205719084	205719404	0.08900	0.00000	longer	K562	AQR
MXE	NUCKS1	ENSG00000069275.12	chr1	-	205696827	205696933	205698699	205698749	205693053	205693109	205719084	205719404	0.07300	0.00009	1included	K562	DROSHA
MXE	NUCKS1	ENSG00000069275.12	chr1	-	205693034	205693109	205696827	205696961	205689628	205689781	205698699	205698749	0.52800	0.00006	1included	K562	AQR
MXE	NUCKS1	ENSG00000069275.12	chr1	-	205696827	205697019	205698699	205698749	205689628	205689781	205719084	205719404	-0.05500	0.00000	2included	K562	AQR
MXE	NUCKS1	ENSG00000069275.12	chr1	-	205696827	205696933	205698699	205698749	205689628	205689781	205719084	205719404	-0.18800	0.00000	2included	K562	AQR
MXE	NUCKS1	ENSG00000069275.12	chr1	-	205696827	205696989	205698699	205698749	205689628	205689781	205719084	205719404	-0.05600	0.00000	2included	K562	AQR
MXE	NUCKS1	ENSG00000069275.12	chr1	-	205696827	205696961	205698699	205698749	205689628	205689781	205719084	205719404	-0.05800	0.00000	2included	K562	AQR

Showing 1 to 10 of 26 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NUCKS1

General Information

Functions

Localization

Domains (AlphaFold: NUCKS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NUCKS1 is not avaliable on ENCORE database.

58 proteins are bound to NUCKS1 RNA:

eCLIP assay for NUCKS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NUCKS1 is not available on ENCORE database.

167 RBPs can affect the gene expression of NUCKS1 :

The Knockdown/knockout RNA-Seq assay for NUCKS1 is not available on ENCORE database.

11 RBPs can affect the splicing of NUCKS1 :

The Knockdown/knockout RNA-Seq assay for NUCKS1 is not avaliable on ENCORE database.