LTBP3

General Information

Gene Name : LTBP3
Gene ID : ENSG00000168056.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LTBP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LTBP3	ENSG00000168056.15	0.63	1.55	1.09	ENCSR000AEF
HepG2	LTBP3	ENSG00000168056.15	77.59	23.24	50.41	ENCSR985KAT
K562	LTBP3	ENSG00000168056.15	5.01	3.26	4.13	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LTBP3 is not avaliable on ENCORE database.

Proteins bound to RNA

LTBP3 RNA is bound by 28 proteins.

CanvasJS.com

eCLIP assay for LTBP3 is not avaliable on ENCORE database.

28 proteins are bound to LTBP3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	65325234	65325343	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.84615	61.30530	HepG2	PRPF8
chr11	65325334	65325413	-	CDS,intron-Distal,intron-Proximal	4.25959	43.02282	HepG2	RBFOX2
chr11	65325238	65325334	-	CDS,intron-Distal,intron-Proximal	4.10631	41.01945	HepG2	RBFOX2
chr11	65319261	65319356	-	intron-Distal,intron-Proximal	6.15233	38.95524	HepG2	HNRNPK
chr11	65318936	65318995	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.46098	36.29274	HepG2	SF3A3
chr11	65325490	65325609	-	5'-UTR,intron-Distal,intron-Proximal	3.68360	31.31737	HepG2	RBFOX2
chr11	65325419	65325565	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.37020	30.34927	HepG2	PCBP2
chr11	65313871	65313950	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.15419	28.29105	HepG2	PRPF8
chr11	65314021	65314115	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.58033	25.38502	HepG2	SF3B4
chr11	65319211	65319354	-	intron-Distal,intron-Proximal	4.76148	23.46412	HepG2	DDX59
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 124 entries

eCLIP assay for LTBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LTBP3 is not available on ENCORE database.
131 RBPs can affect the levels of LTBP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LTBP3 is not available on ENCORE database.

131 RBPs can affect the gene expression of LTBP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LTBP3	ENSG00000168056.10	2503.60310	1081.52390	1.21080	55.03810	52.94880	HepG2	TRIM56
LTBP3	ENSG00000168056.10	2745.60520	1132.27260	1.27780	52.70270	50.97430	HepG2	PTBP1
LTBP3	ENSG00000168056.10	4006.94590	1059.76460	1.91870	53.58610	50.83660	HepG2	G3BP1
LTBP3	ENSG00000168056.10	2260.03090	1103.16510	1.03460	40.21110	38.12580	HepG2	HNRNPU
LTBP3	ENSG00000168056.10	3562.13310	1176.54430	1.59810	38.55000	36.39350	HepG2	NCBP2
LTBP3	ENSG00000168056.10	2856.64160	1617.18950	0.82070	37.22500	35.55640	HepG2	PUM1
LTBP3	ENSG00000168056.10	2910.83850	1504.16810	0.95240	37.36140	35.43200	HepG2	SRSF5
LTBP3	ENSG00000168056.10	3606.00450	2176.41530	0.72830	31.60210	29.90630	HepG2	CKAP4
LTBP3	ENSG00000168056.10	2354.19120	1178.63940	0.99800	26.26970	24.76550	HepG2	SF3B4
LTBP3	ENSG00000168056.10	2629.28810	1132.31680	1.21530	22.41670	19.59770	HepG2	GNB2L1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 163 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LTBP3 is not available on ENCORE database.

12 RBPs can affect the splicing of LTBP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	LTBP3	ENSG00000168056.10	chr11	-	65319018	65319254			65319018	65319127	65319442	65319628	0.11000	0.00000	0.00000	longer	HepG2	U2AF2
RI	LTBP3	ENSG00000168056.10	chr11	-	65318982	65319628			65318982	65319127	65319442	65319628	0.05400	0.00000	0.00000	included	HepG2	U2AF2
MXE	LTBP3	ENSG00000168056.10	chr11	-	65310575	65310695	65310897	65311020	65309070	65309199	65313912	65314035	0.24800	0.00000	0.00000	1included	HepG2	DDX55
A3SS	LTBP3	ENSG00000168056.10	chr11	-	65318596	65318714			65318596	65318695	65318872	65318945	0.07600	0.00007	0.00301	longer	HepG2	U2AF2
SE	LTBP3	ENSG00000168056.10	chr11	-	65307483	65307624			65307190	65307352	65307715	65307853	-0.22100	0.00008	0.00158	excluded	HepG2	U2AF2
MXE	LTBP3	ENSG00000168056.10	chr11	-	65310575	65310695	65310897	65311020	65309070	65309199	65313912	65314035	0.18400	0.00014	0.00799	1included	HepG2	SF3B4
MXE	LTBP3	ENSG00000168056.10	chr11	-	65310575	65310695	65310897	65311020	65309070	65309199	65313912	65314035	0.19000	0.00036	0.01557	1included	HepG2	PCBP1
SE	LTBP3	ENSG00000168056.10	chr11	-	65311534	65311570			65310897	65311020	65313912	65314230	0.11000	0.00048	0.01707	included	HepG2	SF3A3
A3SS	LTBP3	ENSG00000168056.10	chr11	-	65320634	65320770			65320634	65320727	65320895	65321001	0.27200	0.00071	0.00512	longer	K562	AQR
RI	LTBP3	ENSG00000168056.10	chr11	-	65318982	65319628			65318982	65319127	65319442	65319628	0.14700	0.00086	0.01815	included	HepG2	TIAL1

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LTBP3

General Information

Functions

Localization

Domains (AlphaFold: LTBP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LTBP3 is not avaliable on ENCORE database.

28 proteins are bound to LTBP3 RNA:

eCLIP assay for LTBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LTBP3 is not available on ENCORE database.

131 RBPs can affect the gene expression of LTBP3 :

The Knockdown/knockout RNA-Seq assay for LTBP3 is not available on ENCORE database.

12 RBPs can affect the splicing of LTBP3 :

The Knockdown/knockout RNA-Seq assay for LTBP3 is not avaliable on ENCORE database.