CASC5

General Information

Gene Name : CASC5
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CASC5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CASC5 is not avaliable on ENCORE database.

Proteins bound to RNA

CASC5 RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for CASC5 is not avaliable on ENCORE database.

26 proteins are bound to CASC5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	40954839	40954928	+	3'-UTR,intron-Proximal	5.07399	24.95039	K562	UPF1
chr15	40956035	40956127	+	3'-UTR	5.04105	21.87399	K562	FAM120A
chr15	40955628	40955733	+	3'-UTR	4.14889	19.10057	K562	UPF1
chr15	40914995	40915119	+	3'-UTR,CDS,intron-Distal	4.02394	16.95691	K562	SAFB2
chr15	40955635	40955717	+	3'-UTR	3.65535	14.84500	K562	PUM2
chr15	40915453	40915558	+	CDS,intron-Distal	4.11469	13.94220	K562	SAFB2
chr15	40949258	40949352	+	CDS,intron-Proximal	3.30340	13.73403	K562	ZNF622
chr15	40955574	40955628	+	3'-UTR	4.25047	12.91816	K562	UPF1
chr15	40942741	40942782	+	CDS,intron-Proximal	5.68336	12.68085	K562	ZNF622
chr15	40943668	40943719	+	CDS,intron-Proximal	5.65945	12.52114	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 78 entries

eCLIP assay for CASC5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CASC5 is not available on ENCORE database.
130 RBPs can affect the levels of CASC5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CASC5 is not available on ENCORE database.

130 RBPs can affect the gene expression of CASC5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CASC5	ENSG00000137812.15	224.10430	1383.46550	-2.62600	83.64360	81.41750	HepG2	BOP1
CASC5	ENSG00000137812.15	399.31640	1450.72160	-1.86120	81.35360	79.60870	HepG2	SRFBP1
CASC5	ENSG00000137812.15	355.91790	1284.41940	-1.85150	63.16030	61.32650	HepG2	RBM22
CASC5	ENSG00000137812.15	502.22450	1180.59370	-1.23310	42.57670	41.09730	HepG2	ZNF622
CASC5	ENSG00000137812.15	180.59040	607.22370	-1.74950	30.19870	28.53410	HepG2	RPS19
CASC5	ENSG00000137812.15	500.35390	1028.08180	-1.03890	27.94570	26.32690	HepG2	CKAP4
CASC5	ENSG00000137812.15	312.76870	802.68170	-1.35970	27.04080	25.77430	HepG2	TIAL1
CASC5	ENSG00000137812.15	518.41340	1073.45260	-1.05010	26.66840	24.95600	HepG2	UPF1
CASC5	ENSG00000137812.15	222.35890	1359.22380	-2.61180	26.04800	24.60690	HepG2	AKAP1
CASC5	ENSG00000137812.15	373.60650	809.91910	-1.11630	24.83590	23.35380	HepG2	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 158 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CASC5 is not available on ENCORE database.

13 RBPs can affect the splicing of CASC5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CASC5	ENSG00000137812.15	chr15	+	40920808	40920876			40920267	40920406	40921470	40921569	-0.14400	0.00000	0.00005	excluded	K562	AQR
SE	CASC5	ENSG00000137812.15	chr15	+	40937853	40937970			40937194	40937285	40939184	40939236	-0.23200	0.00000	0.00023	excluded	K562	U2AF1
A3SS	CASC5	ENSG00000137812.15	chr15	+	40920790	40920876			40920808	40920876	40920267	40920406	0.13100	0.00000	0.00001	longer	K562	AQR
MXE	CASC5	ENSG00000137812.15	chr15	+	40920790	40920876	40921470	40921569	40920267	40920406	40933109	40933225	0.08700	0.00000	0.00002	1included	K562	AQR
MXE	CASC5	ENSG00000137812.15	chr15	+	40920808	40920876	40921470	40921569	40920267	40920406	40933109	40933225	-0.21400	0.00001	0.00057	2included	K562	SF3B4
MXE	CASC5	ENSG00000137812.15	chr15	+	40937828	40937970	40939184	40939272	40937194	40937285	40942498	40942576	0.07000	0.00002	0.00031	1included	K562	AQR
MXE	CASC5	ENSG00000137812.15	chr15	+	40937828	40937970	40939147	40939272	40937194	40937285	40942498	40942576	0.07400	0.00002	0.00032	1included	K562	AQR
A3SS	CASC5	ENSG00000137812.15	chr15	+	40937828	40937970			40937853	40937970	40937194	40937285	0.14900	0.00005	0.00047	longer	K562	AQR
SE	CASC5	ENSG00000137812.15	chr15	+	40937853	40937970			40937194	40937285	40939184	40939236	-0.19400	0.00007	0.00209	excluded	K562	U2AF2
SE	CASC5	ENSG00000137812.15	chr15	+	40920808	40920876			40920267	40920406	40921470	40921569	-0.06200	0.00013	0.00563	excluded	K562	AGGF1

Showing 1 to 10 of 34 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CASC5

General Information

Functions

Localization

Domains (AlphaFold: CASC5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CASC5 is not avaliable on ENCORE database.

26 proteins are bound to CASC5 RNA:

eCLIP assay for CASC5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CASC5 is not available on ENCORE database.

130 RBPs can affect the gene expression of CASC5 :

The Knockdown/knockout RNA-Seq assay for CASC5 is not available on ENCORE database.

13 RBPs can affect the splicing of CASC5 :

The Knockdown/knockout RNA-Seq assay for CASC5 is not avaliable on ENCORE database.