BDP1

General Information

Gene Name : BDP1
Gene ID : ENSG00000145734.18
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BDP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BDP1	ENSG00000145734.18	19.89	16.06	17.98	ENCSR000AEF
HepG2	BDP1	ENSG00000145734.18	7.61	16.45	12.03	ENCSR985KAT
K562	BDP1	ENSG00000145734.18	14.36	17.38	15.87	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BDP1 is not avaliable on ENCORE database.

Proteins bound to RNA

BDP1 RNA is bound by 22 proteins.

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eCLIP assay for BDP1 is not avaliable on ENCORE database.

22 proteins are bound to BDP1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	70806768	70806854	+	5'-UTR,CDS	5.49145	22.14485	K562	UCHL5
chr5	70805377	70805469	+	5'-UTR,CDS	4.52375	18.87383	K562	UCHL5
chr5	70763181	70763243	+	5'-UTR,CDS	5.41123	18.83305	HepG2	BCLAF1
chr5	70805657	70805779	+	5'-UTR,CDS	4.82009	18.09756	K562	UCHL5
chr5	70806467	70806552	+	5'-UTR,CDS	4.55868	17.85310	K562	UCHL5
chr5	70763243	70763304	+	5'-UTR,CDS	5.24130	16.53902	HepG2	BCLAF1
chr5	70785450	70785509	+	5'-UTR,CDS	4.67403	15.56361	K562	UCHL5
chr5	70835424	70835477	+	CDS,intron-Distal,intron-Proximal	5.27465	15.52964	HepG2	BCLAF1
chr5	70806340	70806417	+	5'-UTR,CDS	5.04443	15.48209	K562	UCHL5
chr5	70800497	70800577	+	5'-UTR,CDS	6.08114	14.96864	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 136 entries

eCLIP assay for BDP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BDP1 is not available on ENCORE database.
97 RBPs can affect the levels of BDP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BDP1 is not available on ENCORE database.

97 RBPs can affect the gene expression of BDP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BDP1	ENSG00000145734.14	3553.86390	2219.91370	0.67880	24.33920	23.23650	HepG2	SRFBP1
BDP1	ENSG00000145734.14	2658.25240	1759.48050	0.59520	17.82460	16.46680	HepG2	SUCLG1
BDP1	ENSG00000145734.14	1694.06720	3294.51320	-0.95960	15.06540	13.26070	K562	GRSF1
BDP1	ENSG00000145734.14	889.71060	1395.76060	-0.64960	14.40450	13.10590	HepG2	SAFB2
BDP1	ENSG00000145734.14	915.83180	1392.67190	-0.60470	13.75050	12.41180	HepG2	DNAJC2
BDP1	ENSG00000145734.14	1034.49810	1618.59340	-0.64580	13.56040	12.31770	HepG2	CKAP4
BDP1	ENSG00000145734.14	3294.53170	1702.12580	0.95260	13.02350	11.62460	HepG2	U2AF1
BDP1	ENSG00000145734.14	958.18450	1522.81600	-0.66840	11.02680	10.14330	HepG2	TIAL1
BDP1	ENSG00000145734.14	1046.62390	1536.58490	-0.55400	10.86170	9.85340	HepG2	TRIM56
BDP1	ENSG00000145734.14	1068.29300	1567.33760	-0.55300	10.88310	9.74720	HepG2	HNRNPU
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 113 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BDP1 is not available on ENCORE database.

8 RBPs can affect the splicing of BDP1 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	BDP1	ENSG00000145734.14	chr5	+	70800426	70800578			70800447	70800578	70798425	70798618	0.26000	0.00001	0.00015	longer	K562	AQR
SE	BDP1	ENSG00000145734.14	chr5	+	70858601	70858722			70858100	70858347	70860580	70863647	0.54600	0.00002	0.01313	included	HepG2	DROSHA
SE	BDP1	ENSG00000145734.14	chr5	+	70858601	70858722			70858100	70858347	70860580	70863647	-0.32500	0.00005	0.00164	excluded	K562	SF3B4
SE	BDP1	ENSG00000145734.14	chr5	+	70858601	70858722			70858100	70858347	70860580	70863647	-0.33100	0.00008	0.02739	excluded	K562	SERBP1
SE	BDP1	ENSG00000145734.14	chr5	+	70858601	70858722			70858100	70858347	70860580	70863647	0.31700	0.00030	0.03875	included	K562	CPSF6
SE	BDP1	ENSG00000145734.14	chr5	+	70858601	70858722			70858100	70858347	70860580	70863647	-0.25900	0.00035	0.00964	excluded	K562	U2AF1
SE	BDP1	ENSG00000145734.14	chr5	+	70858601	70858722			70858100	70858347	70860580	70863647	0.27900	0.00110	0.01848	included	K562	PUS1
A3SS	BDP1	ENSG00000145734.14	chr5	+	70848920	70849147			70848942	70849147	70845246	70845433	0.21400	0.00127	0.00863	longer	K562	AQR
MXE	BDP1	ENSG00000145734.14	chr5	+	70840189	70840334	70840865	70841046	70837931	70838092	70844508	70844572	-0.13300	0.00152	0.02947	2included	HepG2	U2AF1
SE	BDP1	ENSG00000145734.14	chr5	+	70858601	70858722			70858100	70858347	70860580	70863647	0.28100	0.00203	0.04764	included	HepG2	HNRNPK

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BDP1

General Information

Functions

Localization

Domains (AlphaFold: BDP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BDP1 is not avaliable on ENCORE database.

22 proteins are bound to BDP1 RNA:

eCLIP assay for BDP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BDP1 is not available on ENCORE database.

97 RBPs can affect the gene expression of BDP1 :

The Knockdown/knockout RNA-Seq assay for BDP1 is not available on ENCORE database.

8 RBPs can affect the splicing of BDP1 :

The Knockdown/knockout RNA-Seq assay for BDP1 is not avaliable on ENCORE database.