APOB

General Information

Gene Name : APOB
Gene ID : ENSG00000084674.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: APOB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	APOB	ENSG00000084674.14	0.00	0.00	0.00	ENCSR000AEF
HepG2	APOB	ENSG00000084674.14	1527.46	2245.73	1886.60	ENCSR985KAT
K562	APOB	ENSG00000084674.14	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for APOB is not avaliable on ENCORE database.

Proteins bound to RNA

APOB RNA is bound by 50 proteins.

CanvasJS.com

eCLIP assay for APOB is not avaliable on ENCORE database.

50 proteins are bound to APOB RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	21224549	21224556	-	3'-UTR,intron-Distal	4.73589	400.00000	HepG2	TIAL1
chr2	21224460	21224511	-	3'-UTR,intron-Distal	4.10997	400.00000	HepG2	IGF2BP1
chr2	21224316	21224358	-	3'-UTR,intron-Distal	3.36300	400.00000	HepG2	LARP4
chr2	21224393	21224461	-	3'-UTR,intron-Distal	4.56582	400.00000	HepG2	IGF2BP3
chr2	21224556	21224562	-	3'-UTR,intron-Distal	5.16553	400.00000	HepG2	TIAL1
chr2	21224397	21224459	-	3'-UTR,intron-Distal	3.95692	400.00000	HepG2	IGF2BP1
chr2	21266898	21266901	-	5'-UTR,intron-Distal,intron-Proximal	4.59695	400.00000	HepG2	DDX3X
chr2	21266901	21266943	-	5'-UTR,intron-Distal,intron-Proximal	4.82903	400.00000	HepG2	DDX3X
chr2	21266853	21266876	-	5'-UTR,intron-Distal,intron-Proximal	4.67510	400.00000	HepG2	DDX3X
chr2	21266842	21266853	-	5'-UTR,intron-Distal,intron-Proximal	4.47861	400.00000	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 956 entries

eCLIP assay for APOB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for APOB is not available on ENCORE database.
138 RBPs can affect the levels of APOB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for APOB is not available on ENCORE database.

138 RBPs can affect the gene expression of APOB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
APOB	ENSG00000084674.9	151430.58360	599983.84860	-1.98630	99999.99999	99999.99999	HepG2	SRFBP1
APOB	ENSG00000084674.9	76.09140	2161.99080	-4.82850	99999.99999	99999.99999	K562	MTPAP
APOB	ENSG00000084674.9	14.54170	2216.28340	-7.25180	99999.99999	99999.99999	K562	NUFIP2
APOB	ENSG00000084674.9	52.48850	2428.52810	-5.53190	99999.99999	99999.99999	K562	SRPK2
APOB	ENSG00000084674.9	75.95880	2546.94750	-5.06740	99999.99999	99999.99999	K562	UPF1
APOB	ENSG00000084674.9	4.17340	2179.32670	-9.02850	99999.99999	99999.99999	K562	WDR3
APOB	ENSG00000084674.9	2.40690	2266.35550	-9.87900	99999.99999	99999.99999	K562	WDR43
APOB	ENSG00000084674.9	62.85940	2370.38600	-5.23690	304.15490	300.00000	K562	SF3A3
APOB	ENSG00000084674.9	349.78360	1.08050	8.33850	93.54030	89.43500	K562	EIF3H
APOB	ENSG00000084674.9	668088.14380	326200.54870	1.03420	87.92450	85.73080	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 145 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for APOB is not available on ENCORE database.

6 RBPs can affect the splicing of APOB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	APOB	ENSG00000084674.9	chr2	-	21227520	21227547			21227140	21227324	21227951	21235523	-0.05100	0.00000	0.00000	excluded	HepG2	SF3A3
SE	APOB	ENSG00000084674.9	chr2	-	21247836	21247996			21247676	21247748	21249659	21249836	-0.08000	0.00000	0.00005	excluded	HepG2	XRN2
A3SS	APOB	ENSG00000084674.9	chr2	-	21265232	21265410			21265232	21265348	21266384	21266423	0.06900	0.00000	0.00000	longer	HepG2	U2AF2
A3SS	APOB	ENSG00000084674.9	chr2	-	21265232	21265410			21265232	21265348	21266384	21266423	0.05200	0.00000	0.00000	longer	HepG2	U2AF1
A3SS	APOB	ENSG00000084674.9	chr2	-	21251198	21251404			21251198	21251389	21252510	21252657	-0.07500	0.00000	0.00002	shorter	HepG2	SF3B4
MXE	APOB	ENSG00000084674.9	chr2	-	21242594	21242777	21245702	21245914	21241863	21241985	21246396	21246564	-0.18300	0.00000	0.00000	2included	HepG2	U2AF2
A3SS	APOB	ENSG00000084674.9	chr2	-	21265232	21265410			21265232	21265348	21266384	21266423	0.06300	0.00003	0.03022	longer	HepG2	XRN2
MXE	APOB	ENSG00000084674.9	chr2	-	21242594	21242777	21245702	21245914	21241863	21241985	21246396	21246564	-0.11600	0.00006	0.00250	2included	HepG2	FTO

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

APOB

General Information

Functions

Localization

Domains (AlphaFold: APOB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for APOB is not avaliable on ENCORE database.

50 proteins are bound to APOB RNA:

eCLIP assay for APOB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for APOB is not available on ENCORE database.

138 RBPs can affect the gene expression of APOB :

The Knockdown/knockout RNA-Seq assay for APOB is not available on ENCORE database.

6 RBPs can affect the splicing of APOB :

The Knockdown/knockout RNA-Seq assay for APOB is not avaliable on ENCORE database.