WDR46

General Information

Gene Name : WDR46
Gene ID : ENSG00000227057.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: WDR46)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	WDR46	ENSG00000227057.9	37.20	45.51	41.36	ENCSR000AEF
HepG2	WDR46	ENSG00000227057.9	78.27	57.19	67.73	ENCSR985KAT
K562	WDR46	ENSG00000227057.9	60.25	62.62	61.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for WDR46 is not avaliable on ENCORE database.

Proteins bound to RNA

WDR46 RNA is bound by 21 proteins.

CanvasJS.com

eCLIP assay for WDR46 is not avaliable on ENCORE database.

21 proteins are bound to WDR46 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	33246933	33247074	-	3'-UTR,CDS,intron-Distal	5.24116	16.83921	K562	PABPC4
chr6	33248110	33248215	-	CDS,intron-Distal,intron-Proximal	6.19156	11.90432	HepG2	EFTUD2
chr6	33248208	33248268	-	CDS,intron-Distal	4.51593	11.01413	HepG2	PPIG
chr6	33248295	33248428	-	CDS,intron-Distal,intron-Proximal	5.95264	9.67979	K562	EFTUD2
chr6	33255968	33256031	-	CDS,intron-Distal,intron-Proximal	3.98905	9.61107	HepG2	PRPF8
chr6	33246953	33247012	-	3'-UTR,intron-Distal	4.99963	8.90110	K562	YBX3
chr6	33255956	33256052	-	CDS,intron-Distal,intron-Proximal	3.92256	8.66987	HepG2	AQR
chr6	33248414	33248463	-	CDS,intron-Distal,intron-Proximal	3.99353	8.47952	HepG2	PRPF8
chr6	33255873	33255956	-	CDS,intron-Distal,intron-Proximal	5.15995	8.23509	HepG2	AQR
chr6	33255929	33256012	-	CDS,intron-Distal	3.54251	7.50303	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 49 entries

eCLIP assay for WDR46 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for WDR46 is not available on ENCORE database.
82 RBPs can affect the levels of WDR46.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for WDR46 is not available on ENCORE database.

82 RBPs can affect the gene expression of WDR46 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
WDR46	ENSG00000227057.3	1901.71020	1043.84180	0.86530	22.42950	20.82380	K562	FXR1
WDR46	ENSG00000227057.3	984.79290	1657.71100	-0.75130	19.56560	18.46740	HepG2	SSB
WDR46	ENSG00000227057.3	3047.54470	1578.91130	0.94860	17.73000	16.20760	K562	DDX47
WDR46	ENSG00000227057.3	1725.71340	877.24660	0.97600	17.49550	15.42970	K562	EIF3G
WDR46	ENSG00000227057.3	267.98010	688.86270	-1.36210	15.25680	13.29010	K562	G3BP2
WDR46	ENSG00000227057.3	783.61150	1276.92740	-0.70450	13.92660	12.57360	HepG2	SRSF7
WDR46	ENSG00000227057.3	661.51600	1354.18650	-1.03360	13.10520	11.87970	HepG2	DDX6
WDR46	ENSG00000227057.3	708.51110	1301.64880	-0.87750	10.90790	9.77850	HepG2	EIF2S1
WDR46	ENSG00000227057.3	617.88620	1062.32060	-0.78180	10.59580	9.49000	K562	HNRNPC
WDR46	ENSG00000227057.3	1141.12360	758.12360	0.58990	10.34570	9.35990	HepG2	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 99 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for WDR46 is not available on ENCORE database.

24 RBPs can affect the splicing of WDR46 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
A3SS	WDR46	ENSG00000227057.3	chr6	-	33255741	33255836	33255741	33255803	33255924	33256247	0.16700	0.00000	longer	K562	AQR
A3SS	WDR46	ENSG00000227057.3	chr6	-	33247540	33247724	33247540	33247636	33248204	33248365	0.07900	0.00000	longer	K562	AQR
A3SS	WDR46	ENSG00000227057.3	chr6	-	33255910	33256042	33255910	33256012	33256134	33256231	0.05600	0.00001	longer	K562	AQR
A3SS	WDR46	ENSG00000227057.3	chr6	-	33254867	33255058	33254867	33255003	33255131	33255282	0.10100	0.00000	longer	K562	AQR
A3SS	WDR46	ENSG00000227057.3	chr6	-	33256134	33256315	33256134	33256247	33256390	33256471	0.20000	0.00000	longer	K562	AQR
RI	WDR46	ENSG00000227057.3	chr6	-	33246884	33247387	33246884	33247151	33247273	33247387	0.20500	0.00000	included	K562	PRPF8
RI	WDR46	ENSG00000227057.3	chr6	-	33248204	33248764	33248204	33248299	33248450	33248764	0.15800	0.00008	included	HepG2	IGF2BP3
RI	WDR46	ENSG00000227057.3	chr6	-	33246884	33247387	33246884	33247151	33247273	33247387	0.11800	0.00011	included	HepG2	PCBP1
RI	WDR46	ENSG00000227057.3	chr6	-	33246884	33247387	33246884	33247151	33247273	33247387	0.16800	0.00001	included	K562	EFTUD2
RI	WDR46	ENSG00000227057.3	chr6	-	33255924	33256247	33255924	33256012	33256134	33256247	0.11500	0.00000	included	K562	AQR

Showing 1 to 10 of 44 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

WDR46

General Information

Functions

Localization

Domains (AlphaFold: WDR46)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for WDR46 is not avaliable on ENCORE database.

21 proteins are bound to WDR46 RNA:

eCLIP assay for WDR46 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for WDR46 is not available on ENCORE database.

82 RBPs can affect the gene expression of WDR46 :

The Knockdown/knockout RNA-Seq assay for WDR46 is not available on ENCORE database.

24 RBPs can affect the splicing of WDR46 :

The Knockdown/knockout RNA-Seq assay for WDR46 is not avaliable on ENCORE database.