VPS28

General Information

Gene Name : VPS28
Gene ID : ENSG00000160948.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VPS28)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VPS28	ENSG00000160948.13	24.00	44.45	34.23	ENCSR000AEF
HepG2	VPS28	ENSG00000160948.13	44.65	23.63	34.14	ENCSR985KAT
K562	VPS28	ENSG00000160948.13	71.48	54.75	63.12	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VPS28 is not avaliable on ENCORE database.

Proteins bound to RNA

VPS28 RNA is bound by 26 proteins.

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eCLIP assay for VPS28 is not avaliable on ENCORE database.

26 proteins are bound to VPS28 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	145651536	145651624	-	CDS,intron-Distal,intron-Proximal	5.28124	41.59406	K562	AQR
chr8	145652246	145652287	-	intron-Distal,intron-Proximal	5.85839	35.97100	K562	AQR
chr8	145652287	145652291	-	intron-Distal,intron-Proximal	5.54054	27.89973	K562	AQR
chr8	145649893	145649966	-	3'-UTR,intron-Distal	5.26238	27.58978	HepG2	RBFOX2
chr8	145650171	145650279	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.61763	25.62353	K562	SF3B4
chr8	145650216	145650303	-	3'-UTR,intron-Distal,intron-Proximal	4.63959	25.11260	K562	AQR
chr8	145651565	145651644	-	CDS,intron-Distal,intron-Proximal	3.59317	21.43761	K562	SF3B4
chr8	145652155	145652209	-	intron-Distal,intron-Proximal	4.31083	20.92172	K562	AQR
chr8	145650827	145650926	-	3'-UTR,5'-UTR,intron-Distal	3.16572	18.57716	K562	BUD13
chr8	145652236	145652299	-	CDS,intron-Distal,intron-Proximal	4.40019	17.48691	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 94 entries

eCLIP assay for VPS28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VPS28 is not available on ENCORE database.
96 RBPs can affect the levels of VPS28.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VPS28 is not available on ENCORE database.

96 RBPs can affect the gene expression of VPS28 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VPS28	ENSG00000160948.9	2049.98260	1296.50830	0.66090	16.71440	15.44340	K562	AGGF1
VPS28	ENSG00000160948.9	435.60110	196.99700	1.14470	14.88130	13.24770	HepG2	PPIL4
VPS28	ENSG00000160948.9	738.60400	422.94940	0.80420	13.99490	12.87580	HepG2	PUM1
VPS28	ENSG00000160948.9	217.92860	513.83430	-1.23740	13.92420	12.80910	HepG2	TAF15
VPS28	ENSG00000160948.9	519.63490	229.11240	1.18130	13.65790	12.47020	HepG2	BOP1
VPS28	ENSG00000160948.9	80.49980	313.40510	-1.96100	13.63680	11.80920	K562	G3BP2
VPS28	ENSG00000160948.9	381.89060	196.69400	0.95710	10.62350	9.48740	HepG2	SAFB2
VPS28	ENSG00000160948.9	778.16810	486.08920	0.67880	10.43310	9.41000	HepG2	ACO1
VPS28	ENSG00000160948.9	732.78850	447.40300	0.71170	10.23160	9.16260	HepG2	SUCLG1
VPS28	ENSG00000160948.9	1027.74530	579.68670	0.82600	10.78980	8.56200	K562	SRSF5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 107 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VPS28 is not available on ENCORE database.

34 RBPs can affect the splicing of VPS28 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
A3SS	VPS28	ENSG00000160948.9	chr8	-	145652291	145652674	145652291	145652362	145653871	145653927	0.45700	0.00000	longer	K562	AQR
A3SS	VPS28	ENSG00000160948.9	chr8	-	145651304	145651488	145651304	145651446	145651562	145651619	0.08100	0.00000	longer	K562	AQR
A5SS	VPS28	ENSG00000160948.9	chr8	-	145651257	145651446	145651408	145651446	145651043	145651155	0.06300	0.00000	longer	K562	AQR
RI	VPS28	ENSG00000160948.9	chr8	-	145650100	145651155	145650100	145650202	145650328	145651155	0.08000	0.00006	included	K562	PUS1
RI	VPS28	ENSG00000160948.9	chr8	-	145651065	145651591	145651065	145651155	145651408	145651591	0.06900	0.00001	included	K562	PUS1
RI	VPS28	ENSG00000160948.9	chr8	-	145651065	145651591	145651065	145651155	145651408	145651591	0.14400	0.00004	included	HepG2	SF3A3
RI	VPS28	ENSG00000160948.9	chr8	-	145648999	145649515	145648999	145649305	145649423	145649515	0.24900	0.00000	included	K562	HNRNPU
RI	VPS28	ENSG00000160948.9	chr8	-	145651065	145651591	145651065	145651155	145651408	145651591	0.12300	0.00001	included	HepG2	U2AF2
RI	VPS28	ENSG00000160948.9	chr8	-	145651408	145651591	145651408	145651446	145651562	145651591	0.08500	0.00010	included	HepG2	PRPF8
RI	VPS28	ENSG00000160948.9	chr8	-	145651065	145651591	145651065	145651155	145651408	145651591	0.12700	0.00000	included	K562	PRPF8

Showing 1 to 10 of 92 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VPS28

General Information

Functions

Localization

Domains (AlphaFold: VPS28)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VPS28 is not avaliable on ENCORE database.

26 proteins are bound to VPS28 RNA:

eCLIP assay for VPS28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VPS28 is not available on ENCORE database.

96 RBPs can affect the gene expression of VPS28 :

The Knockdown/knockout RNA-Seq assay for VPS28 is not available on ENCORE database.

34 RBPs can affect the splicing of VPS28 :

The Knockdown/knockout RNA-Seq assay for VPS28 is not avaliable on ENCORE database.