USP33

General Information

Gene Name       : USP33
Gene ID             : ENSG00000077254.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: USP33)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878USP33ENSG00000077254.1422.5422.3322.43ENCSR000AEF
HepG2USP33ENSG00000077254.1414.5727.1520.86ENCSR985KAT
K562USP33ENSG00000077254.1432.9231.3832.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for USP33 is not avaliable on ENCORE database.



Proteins bound to RNA
  • USP33 RNA is bound by 21 proteins.  







eCLIP assay for USP33 is not avaliable on ENCORE database.





21 proteins are bound to USP33 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr17817750778177538-3'-UTR,CDS,intron-Distal3.952035.36555HepG2BCLAF1
chr17816232278162404-3'-UTR,intron-Distal3.5210114.43961K562PUM2
chr17816295278163028-3'-UTR,CDS,intron-Distal3.649885.78005K562KHSRP
chr17816184278161877-3'-UTR,intron-Distal3.422436.80241K562KHSRP
chr17817889078178953-3'-UTR,CDS,intron-Distal4.909236.16445HepG2PPIG
chr17816295478163021-3'-UTR,CDS,intron-Distal6.693767.94582K562PUM2
chr17817888478178959-3'-UTR,CDS,intron-Distal,intron-Proximal3.970559.08790HepG2BCLAF1
chr17816171778161842-3'-UTR,intron-Distal3.081536.77588K562KHSRP
chr17816311378163175-3'-UTR,CDS,intron-Distal3.651573.95921HepG2U2AF2
chr17822532378225366-5'-UTR,intron-Distal4.290424.03833K562HNRNPM
chr17822538278225501-5'-UTR,intron-Distal,intron-Proximal4.100887.11978K562DDX3X
chr17822497978225072-5'-UTR,intron-Distal4.082904.08493K562HNRNPM
chr17820003178200099-CDS,intron-Distal,intron-Proximal3.323057.13168HepG2BCLAF1
chr17820705878207121-CDS,intron-Distal,intron-Proximal4.005596.87424K562BUD13
chr17816712078167174-CDS,intron-Distal,intron-Proximal4.520054.45977HepG2U2AF2
chr17818901278189046-CDS,intron-Distal,intron-Proximal3.531833.36945K562ZNF622
chr17819409978194166-CDS,intron-Distal,intron-Proximal3.991346.67313HepG2BCLAF1
chr17819427378194361-CDS,intron-Distal3.109208.01569HepG2BCLAF1
chr17819131878191326-CDS,intron-Distal4.111843.45943HepG2BCLAF1
chr17818781378187918-CDS,intron-Distal,intron-Proximal3.483056.36450HepG2U2AF2
chr17819634178196409-CDS,intron-Distal4.5994112.86440HepG2BCLAF1
chr17818901378189057-CDS,intron-Distal,intron-Proximal4.301817.97334HepG2BCLAF1
chr17820496278205027-CDS,intron-Distal,intron-Proximal4.2985111.55759HepG2BCLAF1
chr17819426578194379-CDS,intron-Distal3.187824.75490HepG2GRWD1
chr17819419978194357-CDS,intron-Distal3.048377.81220K562GRWD1
chr17819421478194273-CDS,intron-Distal3.277486.91872HepG2BCLAF1
chr17818760978187676-CDS,intron-Distal,intron-Proximal4.514105.48475K562TIA1
chr17820656178206623-CDS,intron-Distal,intron-Proximal3.467164.71162K562LIN28B
chr17818755478187624-CDS,intron-Distal,intron-Proximal3.019313.40045K562U2AF2
chr17818751578187553-CDS,intron-Distal,intron-Proximal5.7296212.19672HepG2BCLAF1
chr17818037478180411-CDS,intron-Distal3.885594.76554HepG2BCLAF1
chr17818676878186863-CDS,intron-Distal,intron-Proximal3.153726.02054K562KHSRP
chr17819410478194189-CDS,intron-Distal,intron-Proximal4.213037.52225K562UCHL5
chr17819414778194265-CDS,intron-Distal3.512854.48818HepG2GRWD1
chr17818780478187935-CDS,intron-Distal,intron-Proximal3.088655.01301K562U2AF2
chr17820490778204961-CDS,intron-Distal,intron-Proximal4.7680810.73241K562PRPF8
chr17820657178206623-CDS,intron-Distal,intron-Proximal4.378185.02679K562BUD13
chr17818686778186890-CDS,intron-Distal4.165306.23296HepG2BCLAF1
chr17819431978194375-CDS,intron-Distal3.878336.71596K562UCHL5
chr17819426378194367-CDS,intron-Distal3.284873.99124HepG2PPIG
chr17819402778194080-CDS,intron-Distal,intron-Proximal3.922596.67313HepG2BCLAF1
chr17820473378204795-intron-Distal3.761573.17740K562CSTF2T
chr17821626178216334-intron-Distal3.991284.22415K562PTBP1
chr17817717878177243-intron-Distal,intron-Proximal4.508134.66266K562TARDBP
chr17817550878175587-intron-Distal4.569564.66266K562TARDBP
chr17822483878224909-intron-Distal4.184903.27946HepG2HNRNPM
chr17816681578166871-intron-Distal3.831493.66668K562KHSRP
chr17822513378225229-intron-Distal,intron-Proximal4.2784210.31219K562EXOSC5
chr17820019178200255-intron-Distal,intron-Proximal4.044283.42844K562KHSRP
chr17816693778166996-intron-Distal,intron-Proximal4.213834.96658K562KHSRP
chr17822483578224912-intron-Distal3.890198.99331K562HNRNPM
chr17818736678187432-intron-Distal,intron-Proximal3.474815.89182K562EFTUD2
chr17819120478191294-intron-Distal,intron-Proximal3.067873.17919K562KHSRP
chr17821627778216315-intron-Distal4.444533.09122HepG2PTBP1
chr17822520178225261-intron-Distal4.875225.11689HepG2RBM22
chr17816857078168635-intron-Distal4.159424.45537HepG2HNRNPL
chr17818378978183848-intron-Distal,intron-Proximal4.132514.76003K562KHSRP
chr17818878678188908-intron-Distal3.929055.36861HepG2U2AF2
chr17822485478224910-intron-Distal3.053573.64681K562EXOSC5
chr17822474878224825-intron-Distal5.105227.38693K562EXOSC5
chr17816672278166792-intron-Distal3.253853.73266K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for USP33 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for USP33 is not available on ENCORE database.

  • 54 RBPs can affect the levels of USP33.  








The Knockdown/knockout RNA-Seq assay for USP33 is not available on ENCORE database.





54 RBPs can affect the gene expression of USP33 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
USP33ENSG00000077254.10914.996501140.40330-0.317703.686503.00330HepG2ACO1
USP33ENSG00000077254.101161.445301391.18000-0.260402.648802.01770HepG2CELF1
USP33ENSG00000077254.101310.73510942.641300.475504.637403.78370HepG2DDX21
USP33ENSG00000077254.101162.42170922.407000.333602.747401.83860HepG2DDX24
USP33ENSG00000077254.101331.095801091.065300.286803.037002.33170HepG2DKC1
USP33ENSG00000077254.10784.12150931.64240-0.248701.918501.32120HepG2DNAJC21
USP33ENSG00000077254.10697.87680923.41030-0.404005.306904.44740HepG2DNAJC2
USP33ENSG00000077254.101113.53660890.145800.322902.595301.54930HepG2EIF3G
USP33ENSG00000077254.101201.66290954.146300.332602.540101.49350HepG2ESF1
USP33ENSG00000077254.102101.359801775.490700.243002.842102.23430HepG2ETF1
USP33ENSG00000077254.10937.87770740.948500.339902.622701.85730HepG2FUBP3
USP33ENSG00000077254.101109.147601362.79680-0.297104.243403.42270HepG2HNRNPL
USP33ENSG00000077254.10603.403401039.28920-0.7844015.7485014.39890HepG2HNRNPU
USP33ENSG00000077254.10896.429601061.59980-0.244002.619801.90420HepG2ILF2
USP33ENSG00000077254.101247.179001483.43300-0.250302.292001.59800HepG2NOL12
USP33ENSG00000077254.10806.231501312.10350-0.702602.196701.54780HepG2PABPC4
USP33ENSG00000077254.101048.816001231.75020-0.231902.195601.64440HepG2PCBP1
USP33ENSG00000077254.10929.10190761.696800.286502.528001.78490HepG2PRPF4
USP33ENSG00000077254.10932.84640677.539600.461203.028502.18660HepG2PRPF8
USP33ENSG00000077254.101016.872801253.31450-0.301603.254402.67020HepG2PTBP1
USP33ENSG00000077254.10789.297701416.02480-0.8432013.9817012.78270HepG2PUF60
USP33ENSG00000077254.10819.566501161.57950-0.503208.220807.25610HepG2PUS1
USP33ENSG00000077254.10760.644601093.04910-0.523102.358901.70490HepG2RAVER1
USP33ENSG00000077254.102263.235601483.984700.6088012.4517011.51350HepG2RBM22
USP33ENSG00000077254.101588.868001231.943300.367003.417402.67440HepG2RBM25
USP33ENSG00000077254.10936.198201242.38100-0.408202.693701.71380HepG2RBM27
USP33ENSG00000077254.10998.69780670.213800.575304.107903.17100HepG2RRP9
USP33ENSG00000077254.101116.30230897.541600.314602.110801.48890HepG2SF3B1
USP33ENSG00000077254.10857.329701079.33080-0.332204.222103.45710HepG2SMN1
USP33ENSG00000077254.102093.387001676.111600.320605.081504.46060HepG2SRFBP1
USP33ENSG00000077254.101878.524501362.036200.463708.201807.48740HepG2SRSF1
USP33ENSG00000077254.101855.265901455.271300.350205.413004.74270HepG2SSB
USP33ENSG00000077254.10612.274401018.89060-0.7347014.2167013.07970HepG2TRIM56
USP33ENSG00000077254.101140.629401464.16590-0.360202.411601.63430HepG2UBE2L3
USP33ENSG00000077254.10712.389901124.50400-0.6585011.7190010.62150HepG2UTP3
USP33ENSG00000077254.101009.80140751.715800.425705.659004.75110HepG2ZC3H8
USP33ENSG00000077254.101540.928801801.59170-0.225502.363901.47900K562BCLAF1
USP33ENSG00000077254.101839.637601462.288900.331102.458601.63960K562BOP1
USP33ENSG00000077254.10529.60680702.15510-0.406902.812301.74670K562CCAR1
USP33ENSG00000077254.105725.873304942.409000.212202.312101.42070K562CELF1
USP33ENSG00000077254.101113.330501547.18110-0.474803.820801.82550K562DDX51
USP33ENSG00000077254.101360.137101933.80160-0.507705.944604.75150K562EIF4A3
USP33ENSG00000077254.101202.217501688.00500-0.489606.699004.49120K562EWSR1
USP33ENSG00000077254.101949.483901582.015200.301202.307801.52530K562FMR1
USP33ENSG00000077254.103093.200602150.639000.524204.073203.17390K562G3BP2
USP33ENSG00000077254.102046.857402842.87230-0.473906.305505.15860K562GRSF1
USP33ENSG00000077254.10973.022801391.88610-0.516505.771604.03470K562HNRNPF
USP33ENSG00000077254.102005.846602576.31420-0.361103.820302.55240K562HNRNPL
USP33ENSG00000077254.101758.136002282.62480-0.376604.789203.60610K562HNRNPU
USP33ENSG00000077254.101916.468902552.46270-0.413404.781103.66870K562MAGOH
USP33ENSG00000077254.10887.388501397.49610-0.655206.582205.08730K562PSIP1
USP33ENSG00000077254.101484.820702479.83480-0.7400014.5083013.05320K562PTBP1
USP33ENSG00000077254.105606.301904664.929800.265103.192702.04260K562PUM1
USP33ENSG00000077254.101891.053802378.17690-0.330702.880602.01940K562RBM22
USP33ENSG00000077254.10988.026601275.04630-0.367903.528802.41130K562RCC2
USP33ENSG00000077254.101826.972902237.01750-0.292102.890302.01510K562SF3B4
USP33ENSG00000077254.10790.333401208.70860-0.612906.776404.96680K562SRFBP1
USP33ENSG00000077254.101183.087501529.52810-0.370503.430602.24110K562SRSF4
USP33ENSG00000077254.102980.675002361.600800.335802.883501.49380K562SSRP1
USP33ENSG00000077254.101564.626302460.46940-0.653108.634807.29510K562TARDBP
USP33ENSG00000077254.101014.373101428.00560-0.493404.976003.61940K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for USP33 is not available on ENCORE database.





21 RBPs can affect the splicing of USP33 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUSP33ENSG00000077254.10chr1-782111057821128478207301782074337822532778225537-0.232000.000010.00038excludedK562SRSF1
SEUSP33ENSG00000077254.10chr1-781955447819562378193979781943977819630278196416-0.060000.001960.03616excludedK562SF3B4
SEUSP33ENSG00000077254.10chr1-782065617820662478204949782051027820706078207114-0.074000.004080.06342excludedK562SF3B4
SEUSP33ENSG00000077254.10chr1-7821208378212241782111057821128478225327782253740.895000.000000.00000includedHepG2HNRNPM
SEUSP33ENSG00000077254.10chr1-7821208378212241782111057821128478225327782253740.182000.000470.05495includedK562FMR1
SEUSP33ENSG00000077254.10chr1-782111057821128478207301782074337822532778225537-0.276000.000160.00583excludedHepG2HNRNPK
SEUSP33ENSG00000077254.10chr1-782065617820662478205082782051027820706078207114-0.081000.000000.00005excludedK562AQR
SEUSP33ENSG00000077254.10chr1-781875157818761078186856781868907818770878187881-0.097000.001080.01304excludedK562AQR
SEUSP33ENSG00000077254.10chr1-781955447819562378193979781943977819630278196416-0.105000.000000.00000excludedK562AQR
SEUSP33ENSG00000077254.10chr1-782017407820184378196302781964167820494978205102-0.086000.000190.00301excludedK562AQR
SEUSP33ENSG00000077254.10chr1-781814267818155378180298781804687818355178183732-0.075000.000000.00000excludedK562AQR
SEUSP33ENSG00000077254.10chr1-781955447819562378193979781943977819630278196416-0.060000.000230.00489excludedK562PUS1
SEUSP33ENSG00000077254.10chr1-782065617820661978204995782051027820706078207114-0.081000.001310.02140excludedK562PUS1
SEUSP33ENSG00000077254.10chr1-782111057821128478207301782074337822532778225537-0.205000.000930.01604excludedK562PUS1
SEUSP33ENSG00000077254.10chr1-782111057821128478207301782074337822532778225537-0.196000.000510.07701excludedK562NSUN2
SEUSP33ENSG00000077254.10chr1-782111057821128478207301782074337822532778225537-0.320000.000550.03191excludedHepG2PTBP1
SEUSP33ENSG00000077254.10chr1-781955447819562378193979781943977819630278196416-0.051000.003260.05862excludedK562U2AF1
SEUSP33ENSG00000077254.10chr1-781814267818155378178884781789667818355178183732-0.157000.003570.06283excludedK562U2AF1
SEUSP33ENSG00000077254.10chr1-782065617820662478204949782051027820706078207114-0.100000.001020.02292excludedK562U2AF1
SEUSP33ENSG00000077254.10chr1-7819783378197885781963027819641678200031782001010.055000.000110.02227includedK562HNRNPM
SEUSP33ENSG00000077254.10chr1-7821208378212241782111057821128478225327782253740.966000.000000.00000includedK562HNRNPM
SEUSP33ENSG00000077254.10chr1-781814267818155378180298781804687818355178183732-0.070000.004020.08951excludedHepG2SF3A3
SEUSP33ENSG00000077254.10chr1-782065617820662478204949782051027820706078207114-0.191000.000000.00001excludedK562U2AF2
SEUSP33ENSG00000077254.10chr1-782111057821128478207301782074337822532778225537-0.193000.001370.04777excludedK562TARDBP
SEUSP33ENSG00000077254.10chr1-781670537816715678163547781636167817743178177540-0.097000.002660.07880excludedK562HNRNPU
SEUSP33ENSG00000077254.10chr1-781814267818155378178884781789667818355178183732-0.113000.000230.00854excludedK562RBM15
SEUSP33ENSG00000077254.10chr1-782111057821128478207301782074337822532778225537-0.210000.000000.00030excludedK562ZC3H8
SEUSP33ENSG00000077254.10chr1-782111057821128478207301782074337822532778225537-0.195000.001410.05848excludedK562HNRNPK
SEUSP33ENSG00000077254.10chr1-7819783378197885781963027819641678200031782001010.086000.000070.00198includedK562HNRNPC
SEUSP33ENSG00000077254.10chr1-781814267818155378178884781789667818355178183732-0.147000.002870.04501excludedK562HNRNPC
A3SSUSP33ENSG00000077254.10chr1-781875157818761078187515781875867818770878187881-0.273000.000500.06074shorterK562FXR1
A3SSUSP33ENSG00000077254.10chr1-7818770878187955781877087818788178189015781891280.071000.000100.00087longerK562AQR
MXEUSP33ENSG00000077254.10chr1-7820494978205102782065617820662478196302781964167820706078207114-0.155000.000460.011242includedK562PUS1
MXEUSP33ENSG00000077254.10chr1-78167053781671487817743178177571781635477816361678178884781789660.205000.000000.000001includedK562AQR
MXEUSP33ENSG00000077254.10chr1-78167053781671487817743178177540781635477816361678178884781789660.139000.005000.035951includedK562AQR
MXEUSP33ENSG00000077254.10chr1-78200031782001017820494978205163781963027819641678206561782066240.056000.000030.000431includedK562AQR
MXEUSP33ENSG00000077254.10chr1-78167053781671567817743178177540781635477816361678183551781837320.194000.000000.000001includedK562AQR
MXEUSP33ENSG00000077254.10chr1-78167053781671567817743178177571781635477816361678178884781789660.201000.000000.000001includedK562AQR
MXEUSP33ENSG00000077254.10chr1-78167053781671567817743178177540781635477816361678178884781789660.133000.007790.051701includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7818029878180468781814267818155378177431781775407818355178183732-0.091000.000000.000002includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7819630278196416782049497820510278193979781943977820656178206624-0.095000.000000.000002includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7820494978205102782065617820662478200041782001017820706078207114-0.167000.000010.000112includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7820494978205102782065617820662478196302781964167820706078207114-0.209000.000000.000002includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7820494978205163782065617820662478196302781964167820706078207114-0.123000.000200.002232includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7817888478178966781814267818155378177336781775407818355178183732-0.132000.000690.006622includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7817888478178966781802987818046878177336781775407818142678181553-0.133000.000340.003542includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7817888478178988781814267818155378177349781775407818355178183732-0.122000.001900.015922includedK562AQR
MXEUSP33ENSG00000077254.10chr1-7818029878180468781814267818155378178884781789667818355178183732-0.226000.002170.061572includedHepG2SF3A3
MXEUSP33ENSG00000077254.10chr1-7819397978194397781955447819562378191306781914477819630278196416-0.153000.000900.076622includedK562EWSR1
MXEUSP33ENSG00000077254.10chr1-7820003178200101782017407820184378196302781964167820494978205102-0.194000.000450.019732includedHepG2NCBP2
MXEUSP33ENSG00000077254.10chr1-7820003178200101782017407820184378196302781964167820494978205102-0.190000.001150.058222includedHepG2DDX6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for USP33 is not avaliable on ENCORE database.