TRIM6

General Information

Gene Name       : TRIM6
Gene ID             : ENSG00000121236.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRIM6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM6ENSG00000121236.205.124.644.88ENCSR000AEF
HepG2TRIM6ENSG00000121236.200.000.000.00ENCSR985KAT
K562TRIM6ENSG00000121236.205.947.936.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIM6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIM6 RNA is bound by 2 proteins.  







eCLIP assay for TRIM6 is not avaliable on ENCORE database.





2 proteins are bound to TRIM6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1156325255632641+3'-UTR,CDS,intron-Distal3.947883.19904K562TIA1
chr1156322165632317+CDS,intron-Distal4.039943.24875K562SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIM6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIM6 is not available on ENCORE database.

  • 95 RBPs can affect the levels of TRIM6.  








The Knockdown/knockout RNA-Seq assay for TRIM6 is not available on ENCORE database.





95 RBPs can affect the gene expression of TRIM6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIM6ENSG00000121236.1511.805301.085903.442402.413001.83830HepG2ACO1
TRIM6ENSG00000121236.150.000009.33260-99999.999992.268801.38630HepG2DDX59
TRIM6ENSG00000121236.1516.788300.313005.744904.520703.67440HepG2PUM2
TRIM6ENSG00000121236.1516.535102.073102.995602.529202.02790HepG2RBM22
TRIM6ENSG00000121236.1528.817101.467504.295404.181203.37400HepG2SUPV3L1
TRIM6ENSG00000121236.15105.73430202.48510-0.937404.905703.27600K562AARS
TRIM6ENSG00000121236.15498.49070766.75590-0.621207.127606.27970K562AGGF1
TRIM6ENSG00000121236.151052.79620842.578400.321202.421401.51150K562AKAP8
TRIM6ENSG00000121236.15973.10730797.851500.286401.960601.40790K562AKAP8L
TRIM6ENSG00000121236.15197.37690431.89660-1.129705.702204.91260K562AQR
TRIM6ENSG00000121236.15608.85790837.15210-0.459404.530703.33090K562ATP5C1
TRIM6ENSG00000121236.15402.42880259.882800.630804.926303.08370K562BCCIP
TRIM6ENSG00000121236.15428.55130309.017700.471702.483001.65900K562BOP1
TRIM6ENSG00000121236.15665.12610479.875700.470903.442002.00210K562CIRBP
TRIM6ENSG00000121236.15855.35120468.959100.867004.780503.33390K562CNOT7
TRIM6ENSG00000121236.15519.93260328.566800.662005.726604.60560K562CPSF6
TRIM6ENSG00000121236.15289.13330190.509700.601803.190902.04630K562CSTF2
TRIM6ENSG00000121236.15567.54210290.466900.966305.064802.53070K562DAZAP1
TRIM6ENSG00000121236.15571.29250410.360200.477204.299102.55370K562DDX6
TRIM6ENSG00000121236.151181.22420858.499800.460306.195804.80120K562DKC1
TRIM6ENSG00000121236.15434.90370184.989001.2332013.1111010.53530K562DNAJC21
TRIM6ENSG00000121236.15103.07500216.14590-1.068305.317103.50440K562EEF2
TRIM6ENSG00000121236.15454.52400208.858701.1217011.334709.33370K562EFTUD2
TRIM6ENSG00000121236.15564.22700260.586201.1144016.6899015.14320K562EIF2S2
TRIM6ENSG00000121236.15188.32010265.64580-0.496302.511501.75360K562EIF3G
TRIM6ENSG00000121236.15699.852601050.02060-0.585305.265902.58380K562EIF3H
TRIM6ENSG00000121236.15264.34960422.86760-0.677805.053103.94190K562EIF4A3
TRIM6ENSG00000121236.15251.51610380.83290-0.598504.665903.09600K562EIF4B
TRIM6ENSG00000121236.15331.07670540.78140-0.707904.910403.67670K562EIF4G2
TRIM6ENSG00000121236.15480.81820316.202900.604503.070301.35290K562ESF1
TRIM6ENSG00000121236.15601.03560185.889901.692909.350006.52580K562FAM120A
TRIM6ENSG00000121236.15469.10700284.196100.722905.847803.43050K562FASTKD2
TRIM6ENSG00000121236.15509.97910283.375900.847607.067805.53600K562FTO
TRIM6ENSG00000121236.15431.59160234.848500.877802.872301.50440K562FUS
TRIM6ENSG00000121236.15122.37940439.76770-1.8454029.6863027.83820K562FXR1
TRIM6ENSG00000121236.15344.34030209.391500.717504.348802.53070K562GEMIN5
TRIM6ENSG00000121236.15600.22930313.694300.9361010.269208.72360K562GPKOW
TRIM6ENSG00000121236.15766.01820347.264501.1412015.9625014.10430K562GRSF1
TRIM6ENSG00000121236.15390.28530279.754400.480302.940001.83160K562HNRNPA1
TRIM6ENSG00000121236.15755.12940439.006600.782404.913602.81860K562HNRNPAB
TRIM6ENSG00000121236.15599.83760221.513301.4371021.0982019.52830K562HNRNPC
TRIM6ENSG00000121236.15329.49910197.832000.735904.859103.29320K562HNRNPF
TRIM6ENSG00000121236.15302.31420441.46000-0.546203.824902.55600K562HNRNPL
TRIM6ENSG00000121236.15355.31010244.605300.538502.660701.74890K562HNRNPM
TRIM6ENSG00000121236.15598.35600403.201700.569404.266503.28400K562HSPD1
TRIM6ENSG00000121236.15282.19850447.75550-0.666004.065702.72160K562IGF2BP2
TRIM6ENSG00000121236.15286.05890455.42340-0.670905.511603.72470K562IGF2BP3
TRIM6ENSG00000121236.15239.64070452.71150-0.917707.287904.39250K562KHSRP
TRIM6ENSG00000121236.15386.41620267.871900.528502.315401.47000K562KRR1
TRIM6ENSG00000121236.15220.56830470.56190-1.0932013.3379011.37440K562MAGOH
TRIM6ENSG00000121236.15278.42140469.60560-0.754207.075205.50500K562MATR3
TRIM6ENSG00000121236.15496.82300948.51520-0.9329014.6390012.30080K562MBNL1
TRIM6ENSG00000121236.15654.22400306.203201.0952014.2554012.21130K562METAP2
TRIM6ENSG00000121236.15787.59920576.384100.450302.890101.73070K562MSI2
TRIM6ENSG00000121236.15556.10260324.322400.777809.429508.02910K562MTPAP
TRIM6ENSG00000121236.15581.47120262.430101.147707.056903.80620K562NFX1
TRIM6ENSG00000121236.15528.74770360.335100.553105.719704.70140K562NSUN2
TRIM6ENSG00000121236.151126.63450450.535801.322207.030305.08340K562PABPC1
TRIM6ENSG00000121236.15316.12780459.97840-0.541104.081302.42460K562PCBP1
TRIM6ENSG00000121236.15311.94110216.281400.528302.843801.39790K562PHF6
TRIM6ENSG00000121236.15335.22330252.585000.408302.067401.37600K562POLR2G
TRIM6ENSG00000121236.151325.49360715.593300.889204.410202.41090K562PPP1R8
TRIM6ENSG00000121236.15355.50690203.242800.806605.265604.23050K562PRPF8
TRIM6ENSG00000121236.15359.50980198.615600.856006.507105.02670K562PSIP1
TRIM6ENSG00000121236.1592.55930457.18130-2.3043042.4875040.01100K562PTBP1
TRIM6ENSG00000121236.15492.94910627.76360-0.348802.356401.37840K562PUM1
TRIM6ENSG00000121236.151386.83440614.879101.1733028.4251025.66930K562PUM2
TRIM6ENSG00000121236.15181.91880438.37590-1.2689014.9047012.77140K562RBM22
TRIM6ENSG00000121236.15295.49670427.33770-0.532203.211501.67860K562RBM34
TRIM6ENSG00000121236.15382.03910181.238101.0757010.302708.38280K562RCC2
TRIM6ENSG00000121236.15302.40150461.32200-0.609303.104801.94020K562NELFE
TRIM6ENSG00000121236.15665.04740465.707400.513903.919201.82870K562RECQL
TRIM6ENSG00000121236.15417.74640816.84450-0.9674010.357908.29150K562RPS3
TRIM6ENSG00000121236.15135.04860225.01970-0.736603.624702.37900K562SAFB
TRIM6ENSG00000121236.15569.04910355.582900.678307.507506.21620K562SF3A3
TRIM6ENSG00000121236.15472.11020298.356700.662004.158802.94740K562SF3B1
TRIM6ENSG00000121236.15353.11530476.93710-0.433703.012102.11890K562SF3B4
TRIM6ENSG00000121236.151435.74650670.995301.097306.244803.96800K562SFPQ
TRIM6ENSG00000121236.15353.03860243.932400.533203.020101.35380K562SND1
TRIM6ENSG00000121236.151111.13500632.285300.813303.561202.10140K562SNRNP200
TRIM6ENSG00000121236.15301.37350202.920600.570503.016801.30890K562SRP68
TRIM6ENSG00000121236.15593.77320788.56350-0.409302.877201.79840K562SRSF4
TRIM6ENSG00000121236.15616.76280423.286200.543004.186402.85020K562SRSF5
TRIM6ENSG00000121236.15551.16490274.015201.0081012.9770010.28820K562SSB
TRIM6ENSG00000121236.151434.38650756.243500.923403.729601.97060K562SUPT6H
TRIM6ENSG00000121236.15144.89300253.33190-0.806005.036103.92120K562SYNCRIP
TRIM6ENSG00000121236.15349.69360191.031600.872205.956904.53070K562TIAL1
TRIM6ENSG00000121236.15745.66740444.596600.745906.504804.67370K562U2AF1
TRIM6ENSG00000121236.15746.51290459.180300.701008.568007.14090K562U2AF2
TRIM6ENSG00000121236.151116.48040665.385300.746608.986206.63610K562UBE2L3
TRIM6ENSG00000121236.15330.33430208.294100.665203.936202.69880K562UCHL5
TRIM6ENSG00000121236.151119.68720382.072301.5511050.5484048.00990K562UPF1
TRIM6ENSG00000121236.15543.98720326.925100.734503.320002.36600K562WDR3
TRIM6ENSG00000121236.15257.87410339.97850-0.398802.388201.59780K562WDR43
TRIM6ENSG00000121236.151176.52390643.407400.870604.124301.97180K562XPO5
TRIM6ENSG00000121236.151271.28890744.027300.772803.345501.55310K562YTHDC2
TRIM6ENSG00000121236.15715.29100486.426100.556203.865802.81490K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIM6 is not available on ENCORE database.





2 RBPs can affect the splicing of TRIM6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRIM6ENSG00000121236.15chr11+562447556249655617338561741156257635625859-0.357000.000000.00001excludedK562SRSF1
A5SSTRIM6ENSG00000121236.15chr11+5625763562602756257635625859562656656267970.303000.000830.01591longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRIM6 is not avaliable on ENCORE database.