SSX2IP

General Information

Gene Name       : SSX2IP
Gene ID             : ENSG00000117155.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SSX2IP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSX2IPENSG00000117155.169.148.388.76ENCSR000AEF
HepG2SSX2IPENSG00000117155.165.3311.978.65ENCSR985KAT
K562SSX2IPENSG00000117155.1639.2641.7740.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SSX2IP is not avaliable on ENCORE database.



Proteins bound to RNA
  • SSX2IP RNA is bound by 23 proteins.  







eCLIP assay for SSX2IP is not avaliable on ENCORE database.





23 proteins are bound to SSX2IP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr18511287985112924-3'-UTR,intron-Distal,intron-Proximal4.0939214.38705K562PUM2
chr18511098785111084-3'-UTR,intron-Distal3.6547218.82734K562PUM2
chr18511042885110515-3'-UTR,intron-Distal5.1687210.14619K562KHSRP
chr18511604485116158-3'-UTR,CDS,intron-Distal,intron-Proximal3.622566.96561K562IGF2BP1
chr18511594685116047-3'-UTR,CDS,intron-Distal,intron-Proximal3.6084410.82062K562AQR
chr18513689285136948-3'-UTR,5'-UTR,CDS,intron-Distal3.891088.56326K562DDX3X
chr18511079985110887-3'-UTR,intron-Distal4.000463.98716K562IGF2BP1
chr18511764385117681-3'-UTR,CDS,intron-Distal,intron-Proximal3.789118.04012K562ZNF622
chr18511091985111026-3'-UTR,intron-Distal3.725795.49597K562IGF2BP1
chr18511758685117644-3'-UTR,CDS,intron-Distal3.692273.22245K562GRWD1
chr18511181285111903-3'-UTR,intron-Distal4.37538400.00000K562PUM2
chr18511764485117682-3'-UTR,CDS,intron-Distal,intron-Proximal3.143345.60102K562GRWD1
chr18511267985112794-3'-UTR,intron-Distal3.6570041.43387K562PUM2
chr18515583685155909-5'-UTR,intron-Distal3.417834.01163K562RBM15
chr18515579785155894-5'-UTR,intron-Distal4.445537.50409K562GTF2F1
chr18515592685156012-5'-UTR,intron-Distal,intron-Proximal3.471093.91689K562GTF2F1
chr18513646985136524-5'-UTR,CDS,intron-Distal,intron-Proximal5.167404.90235K562SF3B4
chr18515605085156142-5'-UTR,intron-Distal,intron-Proximal5.9306212.67847K562DDX3X
chr18515606185156157-5'-UTR,intron-Distal,intron-Proximal3.780789.88902HepG2DDX3X
chr18512815885128214-CDS,intron-Distal,intron-Proximal3.577174.57435K562SF3B4
chr18513015885130236-CDS,intron-Distal,intron-Proximal3.404454.37145K562GRWD1
chr18512151185121578-CDS,intron-Distal,intron-Proximal3.6545914.47436K562ZNF622
chr18512813285128205-CDS,intron-Distal,intron-Proximal3.290248.83000K562UCHL5
chr18512201685122040-CDS,intron-Distal,intron-Proximal3.114144.65130K562PRPF8
chr18512151385121522-CDS,intron-Distal,intron-Proximal3.230015.60102K562GRWD1
chr18512805085128115-CDS,intron-Distal,intron-Proximal4.050815.29694K562EFTUD2
chr18513179785131854-CDS,intron-Distal,intron-Proximal3.639559.18311K562UCHL5
chr18512813585128231-CDS,intron-Distal,intron-Proximal4.102146.65875K562GPKOW
chr18513183285131898-CDS,intron-Distal3.012256.34886K562ZNF622
chr18512151385121576-CDS,intron-Distal,intron-Proximal3.5432313.00249K562UCHL5
chr18512788385128022-CDS,intron-Distal3.107147.36517K562DDX24
chr18512394885124001-intron-Distal,intron-Proximal3.395793.93669K562AQR
chr18512805885128101-intron-Distal,intron-Proximal3.822433.00996K562BUD13
chr18511931385119392-intron-Distal3.738775.37900K562TARDBP
chr18513194285132074-intron-Distal,intron-Proximal6.4601413.80520K562QKI
chr18511976885119848-intron-Distal3.999803.45817K562MATR3
chr18513418385134264-intron-Distal3.173744.74253K562KHSRP
chr18513203085132055-intron-Distal3.067873.57533K562KHSRP
chr18513286085132928-intron-Distal4.269507.31365K562EXOSC5
chr18512171185121757-intron-Distal,intron-Proximal4.923115.58150K562SF3B4
chr18515230985152411-intron-Distal4.100606.12189K562PTBP1
chr18515051585150572-intron-Distal3.578403.02234K562KHSRP
chr18512196185122016-intron-Distal,intron-Proximal5.558509.11053K562PRPF8
chr18512821485128269-intron-Distal,intron-Proximal4.637956.59856K562SF3B4
chr18514702585147096-intron-Distal3.212747.81851K562KHSRP
chr18513673685136787-intron-Distal,intron-Proximal4.662205.62025K562KHSRP
chr18515552185155584-intron-Distal3.946193.17740K562CSTF2T
chr18511939285119443-intron-Distal4.741416.45754K562TARDBP
chr18514849185148571-intron-Distal3.338826.46022K562KHSRP
chr18513668385136727-intron-Distal4.214374.07352K562KHSRP
chr18513328685133356-intron-Distal3.346057.12395K562EXOSC5
chr18513403585134109-intron-Distal3.891233.84001K562HNRNPM
chr18513721885137292-intron-Distal4.2524913.78079K562KHSRP
chr18512390085123948-intron-Distal,intron-Proximal4.672063.11721K562AQR
chr18513937085139440-intron-Distal3.613234.72029K562MATR3
chr18513402385134097-intron-Distal4.542219.69330K562EXOSC5
chr18513704185137143-intron-Distal,intron-Proximal3.449327.42482K562KHSRP
chr18512805885128107-intron-Distal,intron-Proximal4.281215.63851K562SF3B4
chr18512772185127807-intron-Distal,intron-Proximal3.013723.94281K562PRPF8
chr18513716485137218-intron-Distal4.917688.49499K562KHSRP
chr18513209285132133-intron-Distal3.444794.56635K562KHSRP
chr18513312885133202-intron-Distal3.8903812.31231K562EXOSC5
chr18513205585132092-intron-Distal4.339736.59336K562KHSRP
chr18513340085133471-intron-Distal3.338506.54976K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SSX2IP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SSX2IP is not available on ENCORE database.

  • 103 RBPs can affect the levels of SSX2IP.  








The Knockdown/knockout RNA-Seq assay for SSX2IP is not available on ENCORE database.





103 RBPs can affect the gene expression of SSX2IP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SSX2IPENSG00000117155.12614.29690415.625200.563603.310102.73530HepG2AKAP1
SSX2IPENSG00000117155.12467.29510374.088900.320902.031701.36110HepG2AKAP8L
SSX2IPENSG00000117155.12465.31020343.907000.436102.258701.54510HepG2ASCC1
SSX2IPENSG00000117155.12476.74680591.99040-0.312402.334401.69470HepG2AUH
SSX2IPENSG00000117155.12247.05000443.21160-0.843205.433204.10550HepG2BCCIP
SSX2IPENSG00000117155.12268.65190520.88000-0.955209.392108.37240HepG2BOP1
SSX2IPENSG00000117155.12258.19370388.77950-0.590503.985703.08340HepG2CALR
SSX2IPENSG00000117155.12510.49950326.731400.643704.500303.52680HepG2CIRBP
SSX2IPENSG00000117155.12238.75480143.592700.733402.275601.58690HepG2CNOT7
SSX2IPENSG00000117155.12144.54420478.20900-1.7261021.8702020.17250HepG2CPSF6
SSX2IPENSG00000117155.12294.81770521.90840-0.824009.568108.50980HepG2CELF1
SSX2IPENSG00000117155.12426.40870561.18870-0.396203.418302.61010HepG2DAZAP1
SSX2IPENSG00000117155.12478.78030277.224600.788203.997002.88620HepG2DDX24
SSX2IPENSG00000117155.12585.47120398.163400.556103.574702.87420HepG2DDX3X
SSX2IPENSG00000117155.12269.23060435.76570-0.694703.920703.01530HepG2DDX55
SSX2IPENSG00000117155.12320.34060543.03720-0.761403.388802.30920HepG2DDX59
SSX2IPENSG00000117155.12139.65550341.96970-1.292009.720008.63840HepG2DDX6
SSX2IPENSG00000117155.12174.89680291.98630-0.739405.267704.32490HepG2DNAJC21
SSX2IPENSG00000117155.12420.66550255.821800.717402.598401.70180HepG2EEF2
SSX2IPENSG00000117155.12169.46430328.80420-0.956206.386505.50600HepG2EIF2S1
SSX2IPENSG00000117155.12494.00680267.665300.884004.715303.34800HepG2EIF3G
SSX2IPENSG00000117155.12423.06970304.447100.474602.754801.66270HepG2ESF1
SSX2IPENSG00000117155.12926.14150679.707900.446205.122304.35010HepG2ETF1
SSX2IPENSG00000117155.12483.26800363.844800.409402.312701.55010HepG2EWSR1
SSX2IPENSG00000117155.12491.52710366.563400.423102.155001.54080HepG2FXR1
SSX2IPENSG00000117155.12314.70560184.932000.766904.811603.63010HepG2GEMIN5
SSX2IPENSG00000117155.12126.82180355.47160-1.4869020.8825018.64350HepG2HDGF
SSX2IPENSG00000117155.12217.86650398.74460-0.872006.867405.80600HepG2HNRNPF
SSX2IPENSG00000117155.12288.15030511.20270-0.8271010.727609.47810HepG2HNRNPL
SSX2IPENSG00000117155.12349.40600244.900100.512603.217202.19910HepG2HNRNPM
SSX2IPENSG00000117155.12222.46320392.65670-0.819704.268503.38590HepG2IGF2BP1
SSX2IPENSG00000117155.12230.69910332.71110-0.528304.019903.15380HepG2ILF2
SSX2IPENSG00000117155.12247.55690340.36060-0.459303.118002.03740HepG2KIF1C
SSX2IPENSG00000117155.12589.16990368.757700.675904.606903.81040HepG2MATR3
SSX2IPENSG00000117155.12495.43770377.455700.392301.898301.36810HepG2NCBP2
SSX2IPENSG00000117155.12423.86040556.47310-0.392702.817102.04600HepG2NOL12
SSX2IPENSG00000117155.12683.07880458.707800.574404.322203.39280HepG2NSUN2
SSX2IPENSG00000117155.12158.51940322.41360-1.024309.827308.39680HepG2PARN
SSX2IPENSG00000117155.12191.39790290.51540-0.602003.851602.99530HepG2PPIL4
SSX2IPENSG00000117155.12534.58950368.433700.536902.548601.37470HepG2PRPF6
SSX2IPENSG00000117155.12620.89570336.176600.885008.049106.75520HepG2PRPF8
SSX2IPENSG00000117155.12393.27160531.19970-0.433702.794802.19570HepG2PUF60
SSX2IPENSG00000117155.12286.14760383.45330-0.422302.403401.59790HepG2RBM15
SSX2IPENSG00000117155.12705.10710568.105100.311602.126301.65700HepG2RBM22
SSX2IPENSG00000117155.12766.49040395.554800.954306.721805.94210HepG2NELFE
SSX2IPENSG00000117155.12221.93170429.43840-0.952304.951204.07200HepG2RPLP0
SSX2IPENSG00000117155.12239.79840144.039100.735303.202102.34330HepG2RPS3A
SSX2IPENSG00000117155.12614.95820367.936700.740904.377302.43790HepG2RTF1
SSX2IPENSG00000117155.12210.20340290.07020-0.464602.652102.01850HepG2SAFB2
SSX2IPENSG00000117155.12333.75770512.09820-0.617604.215103.36100HepG2SF3B1
SSX2IPENSG00000117155.12890.74740386.265801.2053015.3214014.40050HepG2SRSF1
SSX2IPENSG00000117155.12386.61450524.47880-0.440003.575202.88020HepG2SRSF5
SSX2IPENSG00000117155.12204.43020391.72860-0.938207.771006.70140HepG2SRSF7
SSX2IPENSG00000117155.12170.27170314.20970-0.883902.691602.14560HepG2SRSF9
SSX2IPENSG00000117155.12105.39080239.72940-1.185704.164103.02310HepG2SUPT6H
SSX2IPENSG00000117155.12206.11270504.16740-1.2905014.6165013.16230HepG2TARDBP
SSX2IPENSG00000117155.12356.39970164.815701.112502.817401.74070HepG2TBRG4
SSX2IPENSG00000117155.12204.91480290.76650-0.504802.257901.34960HepG2TFIP11
SSX2IPENSG00000117155.12175.15150319.03850-0.865102.588501.77790HepG2TIA1
SSX2IPENSG00000117155.12203.31120319.32320-0.651305.118404.39890HepG2TRIM56
SSX2IPENSG00000117155.12155.54660256.26470-0.720303.763002.87890HepG2UCHL5
SSX2IPENSG00000117155.12506.92440371.544500.448103.473102.31340HepG2UTP18
SSX2IPENSG00000117155.12266.91160348.98460-0.386802.194101.64720HepG2UTP3
SSX2IPENSG00000117155.12546.41870371.943700.554802.886801.80600HepG2XRCC6
SSX2IPENSG00000117155.12131.35910397.54700-1.5976025.9673024.72150HepG2ZNF622
SSX2IPENSG00000117155.123543.793502686.718300.399308.339707.42700K562AGGF1
SSX2IPENSG00000117155.123740.233604497.68160-0.266102.407001.85350K562AQR
SSX2IPENSG00000117155.122106.527602694.53780-0.355205.156503.25970K562BCCIP
SSX2IPENSG00000117155.123491.220702738.945000.350002.725401.85860K562BOP1
SSX2IPENSG00000117155.122932.759102319.421700.338403.915302.10740K562CEBPZ
SSX2IPENSG00000117155.125957.281604271.397500.479802.665501.62860K562CNOT7
SSX2IPENSG00000117155.128631.288506222.522400.472009.382207.63470K562CELF1
SSX2IPENSG00000117155.125539.103703751.339400.5621016.7993015.31570K562DDX47
SSX2IPENSG00000117155.121629.23690990.414100.718004.192201.99120K562DNAJC2
SSX2IPENSG00000117155.123041.702302251.305700.434003.323401.91320K562EEF2
SSX2IPENSG00000117155.121990.903203319.31210-0.737507.764806.64990K562EIF2S2
SSX2IPENSG00000117155.121405.18400883.806500.668904.262302.98780K562EIF3A
SSX2IPENSG00000117155.126795.490205061.085000.425009.703507.98350K562EIF4G2
SSX2IPENSG00000117155.122194.559401691.431600.375602.916701.75570K562FKBP4
SSX2IPENSG00000117155.122933.457002341.075300.325303.697202.11120K562FUS
SSX2IPENSG00000117155.124136.198202721.345300.603905.327304.27380K562G3BP2
SSX2IPENSG00000117155.122987.529802345.480200.349004.834403.34500K562GLRX3
SSX2IPENSG00000117155.123473.729702800.162100.310903.259902.09310K562HNRNPA1
SSX2IPENSG00000117155.123196.764504023.57350-0.331902.777501.98090K562HSPD1
SSX2IPENSG00000117155.121313.77100907.708900.533304.634602.70800K562ILF3
SSX2IPENSG00000117155.124153.692902966.915700.485302.045001.34550K562KIF1C
SSX2IPENSG00000117155.121418.402401975.95840-0.478304.327002.41400K562LIN28B
SSX2IPENSG00000117155.121245.425601737.21670-0.480105.564803.29860K562LSM11
SSX2IPENSG00000117155.122707.333003534.66850-0.384704.398203.33330K562MAGOH
SSX2IPENSG00000117155.123249.188002465.946800.397806.150904.98570K562MTPAP
SSX2IPENSG00000117155.121671.764202142.70000-0.358102.563101.33310K562NONO
SSX2IPENSG00000117155.123454.083702739.999300.334008.845307.61280K562NSUN2
SSX2IPENSG00000117155.121996.489401680.576800.248402.158101.45130K562POLR2G
SSX2IPENSG00000117155.122519.130303368.59060-0.419203.157302.27270K562PPIG
SSX2IPENSG00000117155.122731.843502116.896100.367803.449502.61090K562PRPF8
SSX2IPENSG00000117155.121215.470201746.79540-0.523205.508604.17050K562PSIP1
SSX2IPENSG00000117155.128236.423905873.177700.487809.626407.56380K562PUM1
SSX2IPENSG00000117155.125037.357602772.595700.8613016.0413014.77550K562PUS1
SSX2IPENSG00000117155.123668.410602701.403800.441307.660406.70370K562RBM15
SSX2IPENSG00000117155.122515.589803293.50580-0.388702.617801.80200K562RBM22
SSX2IPENSG00000117155.121016.893901593.72900-0.648209.753107.87440K562RCC2
SSX2IPENSG00000117155.122802.232402156.524200.377803.071802.21010K562RPS19
SSX2IPENSG00000117155.123531.476502164.685400.706007.005904.91350K562RRP9
SSX2IPENSG00000117155.122335.522902703.51500-0.211102.164601.43550K562SF3A3
SSX2IPENSG00000117155.121286.76450957.069600.427003.508302.06670K562SLBP
SSX2IPENSG00000117155.121083.063901510.81210-0.480204.846103.37480K562SRFBP1
SSX2IPENSG00000117155.122222.572503366.39320-0.599008.332807.11330K562SRSF1
SSX2IPENSG00000117155.121583.086902109.13490-0.413904.637703.21150K562SRSF4
SSX2IPENSG00000117155.122799.110402050.019300.449203.366402.23510K562SUPV3L1
SSX2IPENSG00000117155.122063.433501685.666400.291602.911902.06770K562SYNCRIP
SSX2IPENSG00000117155.122404.494003286.64730-0.450906.244804.94280K562TIA1
SSX2IPENSG00000117155.121417.915001784.92010-0.332102.673401.74660K562TRIM56
SSX2IPENSG00000117155.123927.878602725.189400.527309.480907.99180K562U2AF2
SSX2IPENSG00000117155.123267.869002485.962600.394404.824403.65130K562WDR3
SSX2IPENSG00000117155.123562.428502585.014200.4626010.053308.55640K562WDR43
SSX2IPENSG00000117155.126023.769505066.878400.249502.113901.36960K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SSX2IP is not available on ENCORE database.





10 RBPs can affect the splicing of SSX2IP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESSX2IPENSG00000117155.12chr1-8513685985136991851363288513649885156053851562280.130000.004310.06738includedK562SRSF1
SESSX2IPENSG00000117155.12chr1-851318048513193985130099851302358513536385135576-0.053000.001250.02504excludedK562SF3B4
SESSX2IPENSG00000117155.12chr1-851300998513023585128137851282138513536385135576-0.065000.000070.00126excludedK562AQR
SESSX2IPENSG00000117155.12chr1-851300998513023585128137851282138513536385135576-0.070000.002420.03511excludedK562PUS1
SESSX2IPENSG00000117155.12chr1-851368598513699185136328851364988515605385156228-0.263000.000070.00182excludedK562PUS1
SESSX2IPENSG00000117155.12chr1-8511604485116081851130238511329085117565851176800.386000.001680.09209includedK562HNRNPUL1
SESSX2IPENSG00000117155.12chr1-851368598513699185136328851364988515605385156228-0.246000.001050.06651excludedK562HNRNPUL1
SESSX2IPENSG00000117155.12chr1-851368598513699185136328851364988515605385156228-0.230000.000030.00798excludedK562SRSF7
SESSX2IPENSG00000117155.12chr1-851368598513699185136328851364988515583685155987-0.196000.000030.00144excludedK562RBM15
SESSX2IPENSG00000117155.12chr1-851368598513699185136328851364988515605385156228-0.282000.000000.00009excludedK562AGGF1
A3SSSSX2IPENSG00000117155.12chr1-8513685985137021851368598513699185156053851562280.124000.011860.06114longerK562AQR
A3SSSSX2IPENSG00000117155.12chr1-8513009985130251851300998513023585131804851319390.058000.000000.00000longerK562AQR
A3SSSSX2IPENSG00000117155.12chr1-8513632885136517851363288513649885136859851370210.068000.000000.00001longerK562AQR
RISSX2IPENSG00000117155.12chr1-8513536385136498851353638513557685136328851364980.054000.001850.03489includedK562U2AF1
MXESSX2IPENSG00000117155.12chr1-8511604485116210851175658511768085109389851132908512151485121688-0.239000.000210.006032includedK562DROSHA
MXESSX2IPENSG00000117155.12chr1-85130099851302358513180485131939851281378512821385135363851355760.057000.000190.005221includedK562SF3B4
MXESSX2IPENSG00000117155.12chr1-8511604485116210851175658511768085109389851132908512151485121688-0.228000.000490.015362includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SSX2IP is not avaliable on ENCORE database.