SLC39A4

General Information

Gene Name : SLC39A4
Gene ID : ENSG00000147804.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SLC39A4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SLC39A4	ENSG00000147804.9	0.25	3.00	1.62	ENCSR000AEF
HepG2	SLC39A4	ENSG00000147804.9	88.18	12.26	50.22	ENCSR985KAT
K562	SLC39A4	ENSG00000147804.9	60.90	24.81	42.85	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SLC39A4 is not avaliable on ENCORE database.

Proteins bound to RNA

SLC39A4 RNA is bound by 20 proteins.

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eCLIP assay for SLC39A4 is not avaliable on ENCORE database.

20 proteins are bound to SLC39A4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	145639164	145639266	-	CDS,intron-Distal,intron-Proximal	4.72478	44.94393	HepG2	SND1
chr8	145642071	145642170	-	CDS,intron-Distal	4.62897	44.42444	HepG2	DDX3X
chr8	145637822	145637948	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.39350	38.84869	HepG2	PCBP2
chr8	145638638	145638697	-	CDS,intron-Distal,intron-Proximal	4.18965	24.57460	HepG2	SND1
chr8	145641291	145641387	-	CDS,intron-Distal	3.85058	24.45547	HepG2	SND1
chr8	145637938	145638008	-	CDS,intron-Distal,intron-Proximal	4.24666	23.99452	HepG2	SND1
chr8	145638261	145638330	-	CDS,intron-Distal	4.63047	23.72152	HepG2	SND1
chr8	145638163	145638246	-	CDS,intron-Distal	4.56104	23.48658	HepG2	SND1
chr8	145640197	145640245	-	CDS,intron-Distal,intron-Proximal	4.21704	21.69917	HepG2	SND1
chr8	145641387	145641469	-	CDS,intron-Distal	3.63639	21.28157	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 79 entries

eCLIP assay for SLC39A4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SLC39A4 is not available on ENCORE database.
110 RBPs can affect the levels of SLC39A4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SLC39A4 is not available on ENCORE database.

110 RBPs can affect the gene expression of SLC39A4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SLC39A4	ENSG00000147804.5	2495.44600	468.45640	2.41320	79.55890	76.99680	HepG2	PUF60
SLC39A4	ENSG00000147804.5	1075.42180	302.35520	1.83050	64.88920	62.65970	HepG2	TRIM56
SLC39A4	ENSG00000147804.5	1649.51060	449.21950	1.87640	47.96840	45.81200	HepG2	SLBP
SLC39A4	ENSG00000147804.5	1229.55170	462.55740	1.41030	46.70840	44.59450	HepG2	SRSF5
SLC39A4	ENSG00000147804.5	727.28850	274.04170	1.40800	36.76080	34.63400	HepG2	DNAJC2
SLC39A4	ENSG00000147804.5	3528.45210	1215.21310	1.53770	35.72530	33.72190	HepG2	GPKOW
SLC39A4	ENSG00000147804.5	1064.63540	2071.14080	-0.96010	31.93420	30.71140	HepG2	SRSF1
SLC39A4	ENSG00000147804.5	2881.61220	1565.00140	0.88060	31.41580	29.77550	HepG2	DKC1
SLC39A4	ENSG00000147804.5	1180.44470	276.45310	2.09410	22.17410	20.39570	HepG2	DNAJC21
SLC39A4	ENSG00000147804.5	683.37390	1861.75760	-1.44590	21.28760	19.93780	HepG2	TAF15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 124 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SLC39A4 is not available on ENCORE database.

6 RBPs can affect the splicing of SLC39A4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SLC39A4	ENSG00000147804.5	chr8	-	145639341	145639500	145639133	145639265	145639645	145639818	-0.09000	0.00034	0.02683	excluded	HepG2	SRSF9
SE	SLC39A4	ENSG00000147804.5	chr8	-	145638620	145638773	145638142	145638330	145638896	145638970	-0.23800	0.00047	0.02235	excluded	K562	PTBP1
SE	SLC39A4	ENSG00000147804.5	chr8	-	145641193	145641475	145640610	145640803	145641981	145642279	-0.32000	0.00056	0.05966	excluded	HepG2	TAF15
SE	SLC39A4	ENSG00000147804.5	chr8	-	145641193	145641475	145640610	145640803	145641981	145642279	0.11500	0.00126	0.06152	included	HepG2	PTBP1
SE	SLC39A4	ENSG00000147804.5	chr8	-	145641193	145641475	145640610	145640803	145641981	145642279	0.09700	0.00158	0.05881	included	HepG2	MATR3
RI	SLC39A4	ENSG00000147804.5	chr8	-	145638740	145638951	145638740	145638773	145638896	145638951	0.10500	0.00180	0.01980	included	K562	EFTUD2
RI	SLC39A4	ENSG00000147804.5	chr8	-	145638740	145638951	145638740	145638773	145638896	145638951	0.09100	0.00351	0.04053	included	K562	PRPF8

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SLC39A4

General Information

Functions

Localization

Domains (AlphaFold: SLC39A4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SLC39A4 is not avaliable on ENCORE database.

20 proteins are bound to SLC39A4 RNA:

eCLIP assay for SLC39A4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SLC39A4 is not available on ENCORE database.

110 RBPs can affect the gene expression of SLC39A4 :

The Knockdown/knockout RNA-Seq assay for SLC39A4 is not available on ENCORE database.

6 RBPs can affect the splicing of SLC39A4 :

The Knockdown/knockout RNA-Seq assay for SLC39A4 is not avaliable on ENCORE database.