SEC23IP

General Information

Gene Name : SEC23IP
Gene ID : ENSG00000107651.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SEC23IP)

Not Available

Antibody Validation

View validation images for all SEC23IP antibodies

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SEC23IP	ENSG00000107651.12	42.95	46.56	44.76	ENCSR000AEF
HepG2	SEC23IP	ENSG00000107651.12	34.99	46.44	40.72	ENCSR985KAT
K562	SEC23IP	ENSG00000107651.12	21.10	25.82	23.46	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	BGKcLV33-29,BGKcLV33-30		SEC23IP	K562	Released			CRISPR	KD% = no band on the position,
knockdown followed by RNA-seq	SEC23IP-BGHcLV31-HepG2	ENCSR745KNE	SEC23IP	HepG2	Released		ENCSR452TFV	CRISPR	KD% = 87.1,87.6

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SEC23IP	ENCAB911OUO	A300-592A	1			Released, ENCODE4	BGHcLV31-31, Released, ENCODE4
SEC23IP	ENCAB820MEZ	A300-594A	1			Released, ENCODE4	BGHcLV31-31, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SEC23IP	K562	CRISPR			BGKcLV33-29,BGKcLV33-30	BGKcLV33-1,BGKcLV33-2	no band on the position,	Released	ENCODE4
SEC23IP	K562	CRISPR			BGKcLV33-35,BGKcLV33-36	BGKcLV33-1,BGKcLV33-2	no band,	NotSatisfied	ENCODE4
SEC23IP	HepG2	CRISPR	ENCSR745KNE	ENCSR452TFV	SEC23IP-BGHcLV31-31,SEC23IP-BGHcLV31-32	NT-BGHcLV31-1,NT-BGHcLV31-2	87.1,87.6	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SEC23IP	Product_ID: A300-592A Lot_ID: 1 Source: Bethyl Labs Target Name: SEC23IP-human
SEC23IP	Product_ID: A300-594A Lot_ID: 1 Source: Bethyl Labs Target Name: SEC23IP-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SEC23IP is not avaliable on ENCORE database.

Proteins bound to RNA

SEC23IP RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for SEC23IP is not avaliable on ENCORE database.

19 proteins are bound to SEC23IP RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	121692292	121692414	+	intron-Distal	4.17757	13.35401	HepG2	U2AF2
chr10	121658310	121658458	+	CDS,intron-Distal	5.33633	10.37403	K562	IGF2BP2
chr10	121659469	121659575	+	intron-Distal	5.56367	9.00303	HepG2	PCBP2
chr10	121680419	121680497	+	CDS,intron-Proximal	3.20197	8.30744	HepG2	BCLAF1
chr10	121692262	121692381	+	intron-Distal	4.62643	8.21761	HepG2	PTBP1
chr10	121685546	121685567	+	CDS,intron-Proximal	5.12407	7.04013	HepG2	BCLAF1
chr10	121685567	121685613	+	CDS	4.16530	6.65960	HepG2	BCLAF1
chr10	121691743	121691865	+	CDS,intron-Proximal	3.51839	6.43326	K562	UCHL5
chr10	121692273	121692361	+	intron-Distal	3.42828	6.26469	K562	PTBP1
chr10	121691761	121691858	+	CDS,intron-Proximal	4.49204	5.93840	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 41 entries

eCLIP assay for SEC23IP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SEC23IP is not available on ENCORE database.
81 RBPs can affect the levels of SEC23IP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SEC23IP is not available on ENCORE database.

81 RBPs can affect the gene expression of SEC23IP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SEC23IP	ENSG00000107651.8	834.89220	1650.92520	-0.98360	30.53970	28.91220	HepG2	TRIM56
SEC23IP	ENSG00000107651.8	687.43230	1695.18650	-1.30220	29.33900	27.37490	HepG2	HNRNPC
SEC23IP	ENSG00000107651.8	1548.60160	2591.67540	-0.74290	21.75950	20.34920	HepG2	ETF1
SEC23IP	ENSG00000107651.8	1294.69970	2072.99300	-0.67910	21.71450	20.00360	HepG2	HNRNPL
SEC23IP	ENSG00000107651.8	1047.15260	1683.98000	-0.68540	16.45540	15.07350	HepG2	HNRNPU
SEC23IP	ENSG00000107651.8	2320.86700	1611.49020	0.52620	14.15670	12.89560	HepG2	CKAP4
SEC23IP	ENSG00000107651.8	897.83760	1723.85300	-0.94110	11.94970	10.64700	HepG2	EIF4A3
SEC23IP	ENSG00000107651.8	2121.82010	1501.35690	0.49890	10.00740	8.96830	HepG2	PCBP1
SEC23IP	ENSG00000107651.8	1295.81250	2161.85620	-0.73840	9.96090	8.84990	HepG2	HNRNPLL
SEC23IP	ENSG00000107651.8	1208.37920	1998.38970	-0.72580	9.72890	8.51520	HepG2	CPSF6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 88 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SEC23IP is not available on ENCORE database.

13 RBPs can affect the splicing of SEC23IP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SEC23IP	ENSG00000107651.8	chr10	+	121689118	121689274	121685547	121685739	121689840	121689943	-0.27500	0.00000	0.00000	excluded	HepG2	U2AF1
SE	SEC23IP	ENSG00000107651.8	chr10	+	121689118	121689274	121685547	121685739	121689840	121689943	-0.25100	0.00000	0.00001	excluded	HepG2	U2AF2
SE	SEC23IP	ENSG00000107651.8	chr10	+	121689118	121689274	121685547	121685739	121689840	121689943	-0.24200	0.00000	0.00000	excluded	HepG2	HNRNPU
A5SS	SEC23IP	ENSG00000107651.8	chr10	+	121680400	121680587	121680400	121680496	121685547	121685739	0.13800	0.00000	0.00000	longer	K562	AQR
SE	SEC23IP	ENSG00000107651.8	chr10	+	121689118	121689274	121685547	121685739	121689840	121689943	-0.14500	0.00001	0.02146	excluded	HepG2	IGF2BP1
A3SS	SEC23IP	ENSG00000107651.8	chr10	+	121680366	121680496	121680400	121680496	121678955	121679108	0.12900	0.00001	0.00013	longer	K562	AQR
SE	SEC23IP	ENSG00000107651.8	chr10	+	121689840	121689943	121689118	121689274	121691644	121691830	-0.17700	0.00008	0.00351	excluded	K562	RBM15
SE	SEC23IP	ENSG00000107651.8	chr10	+	121689118	121689274	121685547	121685739	121689840	121689943	-0.13100	0.00021	0.03809	excluded	HepG2	HNRNPA1
SE	SEC23IP	ENSG00000107651.8	chr10	+	121689840	121689943	121689118	121689274	121691644	121691830	-0.14700	0.00033	0.00482	excluded	K562	AQR
SE	SEC23IP	ENSG00000107651.8	chr10	+	121692516	121692679	121691644	121691830	121693197	121693299	-0.07000	0.00048	0.03982	excluded	K562	HNRNPUL1

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SEC23IP

General Information

Functions

Localization

Domains (AlphaFold: SEC23IP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SEC23IP is not avaliable on ENCORE database.

19 proteins are bound to SEC23IP RNA:

eCLIP assay for SEC23IP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SEC23IP is not available on ENCORE database.

81 RBPs can affect the gene expression of SEC23IP :

The Knockdown/knockout RNA-Seq assay for SEC23IP is not available on ENCORE database.

13 RBPs can affect the splicing of SEC23IP :

The Knockdown/knockout RNA-Seq assay for SEC23IP is not avaliable on ENCORE database.