SDHA

General Information

Gene Name : SDHA
Gene ID : ENSG00000073578.16
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SDHA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SDHA	ENSG00000073578.16	30.32	53.92	42.12	ENCSR000AEF
HepG2	SDHA	ENSG00000073578.16	182.91	108.38	145.64	ENCSR985KAT
K562	SDHA	ENSG00000073578.16	110.13	98.42	104.28	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SDHA is not avaliable on ENCORE database.

Proteins bound to RNA

SDHA RNA is bound by 30 proteins.

CanvasJS.com

eCLIP assay for SDHA is not avaliable on ENCORE database.

30 proteins are bound to SDHA RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	256575	256658	+	3'-UTR	4.71773	80.40337	K562	PUM2
chr5	256578	256708	+	3'-UTR	4.86227	40.06494	HepG2	SUB1
chr5	228971	229059	+	intron-Distal	6.65501	38.84947	K562	QKI
chr5	256574	256699	+	3'-UTR	4.01790	17.89272	HepG2	DDX55
chr5	226161	226174	+	CDS,intron-Proximal	4.95511	17.55185	K562	AQR
chr5	226174	226196	+	intron-Proximal	4.93262	17.54254	K562	AQR
chr5	235282	235385	+	CDS,intron-Distal	4.39484	17.12216	HepG2	RPS3
chr5	223594	223679	+	CDS,intron-Proximal	4.96101	17.04464	K562	LIN28B
chr5	226196	226204	+	intron-Proximal	4.51758	16.60780	K562	AQR
chr5	235286	235372	+	CDS,intron-Distal	4.08112	15.84989	K562	RPS3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 89 entries

eCLIP assay for SDHA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SDHA is not available on ENCORE database.
114 RBPs can affect the levels of SDHA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SDHA is not available on ENCORE database.

114 RBPs can affect the gene expression of SDHA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SDHA	ENSG00000073578.12	1798.28560	4717.34290	-1.39140	72.02520	70.09760	HepG2	RBM22
SDHA	ENSG00000073578.12	1723.67580	3700.17990	-1.10210	53.58890	51.55480	HepG2	PCBP1
SDHA	ENSG00000073578.12	3124.41290	5327.96560	-0.77000	37.19640	35.90930	HepG2	SRFBP1
SDHA	ENSG00000073578.12	10370.05150	5610.07140	0.88620	35.44920	33.48510	K562	AGGF1
SDHA	ENSG00000073578.12	3436.02010	5644.07140	-0.71600	28.00500	26.42670	HepG2	ETF1
SDHA	ENSG00000073578.12	1886.42700	3811.37780	-1.01470	21.71120	19.88690	HepG2	U2AF1
SDHA	ENSG00000073578.12	10201.79750	5640.72690	0.85480	21.13080	19.43620	K562	RBM15
SDHA	ENSG00000073578.12	1186.99860	2388.85400	-1.00900	21.23770	18.75690	HepG2	AATF
SDHA	ENSG00000073578.12	5032.78520	9121.68750	-0.85790	20.55970	18.24460	K562	PUF60
SDHA	ENSG00000073578.12	4028.03990	6053.86770	-0.58780	16.44290	14.97580	K562	DDX47
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 131 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SDHA is not available on ENCORE database.

13 RBPs can affect the splicing of SDHA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SDHA	ENSG00000073578.12	chr5	+	225533	225677	224474	224636	225997	226162	-0.30900	0.00000	0.00000	excluded	K562	SRSF1
SE	SDHA	ENSG00000073578.12	chr5	+	235205	235454	233591	233760	236542	236714	-0.07800	0.00000	0.00005	excluded	K562	AQR
SE	SDHA	ENSG00000073578.12	chr5	+	225533	225677	224474	224636	225997	226162	-0.09000	0.00000	0.00000	excluded	K562	U2AF1
SE	SDHA	ENSG00000073578.12	chr5	+	225533	225677	224474	224636	225997	226162	-0.06300	0.00000	0.00000	excluded	HepG2	SRSF1
SE	SDHA	ENSG00000073578.12	chr5	+	225533	225677	224474	224636	225997	226162	-0.07500	0.00000	0.00000	excluded	K562	U2AF2
SE	SDHA	ENSG00000073578.12	chr5	+	225533	225677	224474	224636	225997	226162	-0.08100	0.00000	0.00000	excluded	K562	TARDBP
SE	SDHA	ENSG00000073578.12	chr5	+	251452	251583	240472	240591	254507	254621	-0.12900	0.00000	0.00026	excluded	K562	AGGF1
A3SS	SDHA	ENSG00000073578.12	chr5	+	256448	256794	256465	256794	254507	254621	-0.10900	0.00001	0.01310	shorter	HepG2	SUPV3L1
SE	SDHA	ENSG00000073578.12	chr5	+	225566	225677	224474	224636	225997	226162	-0.07100	0.00002	0.00070	excluded	HepG2	U2AF1
A3SS	SDHA	ENSG00000073578.12	chr5	+	256448	256794	256465	256794	254507	254621	-0.05100	0.00006	0.01033	shorter	K562	EFTUD2

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SDHA

General Information

Functions

Localization

Domains (AlphaFold: SDHA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SDHA is not avaliable on ENCORE database.

30 proteins are bound to SDHA RNA:

eCLIP assay for SDHA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SDHA is not available on ENCORE database.

114 RBPs can affect the gene expression of SDHA :

The Knockdown/knockout RNA-Seq assay for SDHA is not available on ENCORE database.

13 RBPs can affect the splicing of SDHA :

The Knockdown/knockout RNA-Seq assay for SDHA is not avaliable on ENCORE database.