SCRN2

General Information

Gene Name : SCRN2
Gene ID : ENSG00000141295.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SCRN2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SCRN2	ENSG00000141295.13	1.87	7.32	4.60	ENCSR000AEF
HepG2	SCRN2	ENSG00000141295.13	26.70	11.40	19.05	ENCSR985KAT
K562	SCRN2	ENSG00000141295.13	15.12	9.12	12.12	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SCRN2 is not avaliable on ENCORE database.

Proteins bound to RNA

SCRN2 RNA is bound by 14 proteins.

CanvasJS.com

eCLIP assay for SCRN2 is not avaliable on ENCORE database.

14 proteins are bound to SCRN2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	45916159	45916205	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49147	5.86107	HepG2	PPIG
chr17	45915375	45915470	-	3'-UTR,intron-Distal	5.43043	8.42776	K562	SF3B4
chr17	45916288	45916357	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.30211	3.36945	K562	ZNF622
chr17	45915894	45915924	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.43546	3.34848	HepG2	PPIG
chr17	45915253	45915334	-	3'-UTR,CDS,intron-Distal	3.98096	3.58172	HepG2	SRSF1
chr17	45915259	45915373	-	3'-UTR,CDS,intron-Distal	3.83249	7.91102	HepG2	LSM11
chr17	45916273	45916359	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46077	5.74131	HepG2	PPIG
chr17	45915957	45915984	-	3'-UTR,CDS,intron-Distal	4.69118	4.38106	HepG2	PPIG
chr17	45915570	45915627	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.22755	4.23812	HepG2	LSM11
chr17	45916033	45916060	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.58468	3.86355	HepG2	PPIG
chr17	45915407	45915467	-	3'-UTR,intron-Distal	4.26972	3.83279	HepG2	ZC3H11A
chr17	45918473	45918610	-	5'-UTR,intron-Distal,intron-Proximal	4.80493	6.13547	HepG2	NCBP2
chr17	45918464	45918526	-	5'-UTR,intron-Distal,intron-Proximal	4.82639	3.11886	K562	DROSHA
chr17	45918435	45918547	-	5'-UTR,intron-Distal,intron-Proximal	4.30040	4.36078	K562	GTF2F1
chr17	45918444	45918599	-	5'-UTR,intron-Distal,intron-Proximal	5.34897	8.32512	HepG2	PRPF4
chr17	45918044	45918125	-	CDS,intron-Distal	3.26763	3.77784	K562	RBM15
chr17	45917985	45918077	-	CDS,intron-Distal,intron-Proximal	3.45318	4.76426	K562	PRPF8
chr17	45917990	45918112	-	CDS,intron-Distal,intron-Proximal	3.51378	16.67948	HepG2	PRPF8
chr17	45917577	45917625	-	CDS,intron-Distal	3.32774	5.58370	HepG2	PPIG
chr17	45917717	45917771	-	CDS,intron-Distal,intron-Proximal	3.57937	3.95921	HepG2	U2AF2
chr17	45916733	45916793	-	intron-Distal,intron-Proximal	4.89234	5.17615	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SCRN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SCRN2 is not available on ENCORE database.
94 RBPs can affect the levels of SCRN2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SCRN2 is not available on ENCORE database.

94 RBPs can affect the gene expression of SCRN2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SCRN2	ENSG00000141295.9	532.76520	338.30710	0.65510	2.65620	1.73260	HepG2	ABCF1
SCRN2	ENSG00000141295.9	137.54330	377.25580	-1.45570	21.00760	19.68210	HepG2	ACO1
SCRN2	ENSG00000141295.9	817.50420	508.75580	0.68420	5.74140	4.63290	HepG2	ASCC1
SCRN2	ENSG00000141295.9	384.79570	615.57780	-0.67780	7.98300	6.91450	HepG2	AUH
SCRN2	ENSG00000141295.9	394.60840	233.81250	0.75500	4.16500	3.08230	HepG2	BCLAF1
SCRN2	ENSG00000141295.9	118.31100	216.57150	-0.87230	4.69740	3.72520	HepG2	CALR
SCRN2	ENSG00000141295.9	232.46920	145.98310	0.67110	3.04090	2.32470	HepG2	CPSF6
SCRN2	ENSG00000141295.9	323.38990	431.10100	-0.41480	2.74240	2.10200	HepG2	CELF1
SCRN2	ENSG00000141295.9	433.27460	348.89980	0.31240	2.12500	1.38650	HepG2	DDX19B
SCRN2	ENSG00000141295.9	415.01540	270.12740	0.61940	4.17040	3.35350	HepG2	DDX21
SCRN2	ENSG00000141295.9	425.96590	588.97400	-0.46750	2.70460	2.08490	HepG2	DDX3X
SCRN2	ENSG00000141295.9	579.72890	360.92720	0.68360	7.61580	6.59700	HepG2	DKC1
SCRN2	ENSG00000141295.9	341.77340	207.03370	0.72310	5.35320	4.49020	HepG2	DNAJC2
SCRN2	ENSG00000141295.9	177.08110	368.63130	-1.05780	10.14550	8.57900	HepG2	EWSR1
SCRN2	ENSG00000141295.9	209.68180	341.57070	-0.70400	2.93650	2.14330	HepG2	FIP1L1
SCRN2	ENSG00000141295.9	725.27400	534.23770	0.44090	2.78570	1.89230	HepG2	G3BP2
SCRN2	ENSG00000141295.9	246.12590	339.18380	-0.46270	2.28180	1.36060	HepG2	GNB2L1
SCRN2	ENSG00000141295.9	486.71340	360.16100	0.43430	3.55470	2.45730	HepG2	HDGF
SCRN2	ENSG00000141295.9	146.25670	260.02360	-0.83010	3.16220	1.67330	HepG2	HLTF
SCRN2	ENSG00000141295.9	477.06440	210.81620	1.17810	4.96800	4.13520	HepG2	HNRNPA1
SCRN2	ENSG00000141295.9	417.89710	234.51480	0.83340	4.38140	3.52390	HepG2	HNRNPC
SCRN2	ENSG00000141295.9	361.18850	219.07370	0.72120	6.27640	5.25520	HepG2	HNRNPF
SCRN2	ENSG00000141295.9	573.95810	422.24980	0.44270	4.24440	3.42360	HepG2	HNRNPL
SCRN2	ENSG00000141295.9	378.53400	157.89920	1.26130	11.01600	9.86260	HepG2	HNRNPLL
SCRN2	ENSG00000141295.9	506.06060	232.96280	1.11910	17.12820	15.71920	HepG2	HNRNPU
SCRN2	ENSG00000141295.9	351.14420	215.72580	0.70280	5.27070	4.30440	HepG2	IGF2BP1
SCRN2	ENSG00000141295.9	312.75090	511.34200	-0.70930	5.18550	4.28750	HepG2	IGF2BP2
SCRN2	ENSG00000141295.9	247.61580	480.02850	-0.95500	2.98730	1.96660	HepG2	IGF2BP3
SCRN2	ENSG00000141295.9	313.58360	181.84400	0.78600	4.45780	2.89230	HepG2	KHDRBS1
SCRN2	ENSG00000141295.9	914.86610	514.39510	0.83060	6.94640	5.27540	HepG2	KHSRP
SCRN2	ENSG00000141295.9	270.26230	545.64130	-1.01360	8.73430	7.66400	HepG2	MATR3
SCRN2	ENSG00000141295.9	462.36270	276.27610	0.74280	5.41320	4.31330	HepG2	MSI2
SCRN2	ENSG00000141295.9	284.31940	181.80450	0.64500	3.73860	2.30670	HepG2	PKM
SCRN2	ENSG00000141295.9	381.22050	207.78060	0.87550	8.06550	6.85570	HepG2	PPIL4
SCRN2	ENSG00000141295.9	735.89660	438.77160	0.74590	8.16020	7.20890	HepG2	PUF60
SCRN2	ENSG00000141295.9	573.22130	384.25710	0.57690	6.33920	5.47540	HepG2	PUS1
SCRN2	ENSG00000141295.9	94.36420	247.37880	-1.39040	6.96760	5.87530	HepG2	RAVER1
SCRN2	ENSG00000141295.9	220.92410	590.74990	-1.41900	23.63370	22.41780	HepG2	RBM22
SCRN2	ENSG00000141295.9	1062.01920	522.95920	1.02190	17.48760	15.89260	HepG2	RBM25
SCRN2	ENSG00000141295.9	522.72600	325.43790	0.68360	4.31120	2.98610	HepG2	RCC2
SCRN2	ENSG00000141295.9	427.05740	191.62840	1.15600	9.02480	7.60940	HepG2	RPS3A
SCRN2	ENSG00000141295.9	419.73750	207.45140	1.01660	11.55610	10.37830	HepG2	SAFB2
SCRN2	ENSG00000141295.9	259.34510	109.50400	1.24380	2.65730	1.34260	HepG2	SF1
SCRN2	ENSG00000141295.9	238.94290	370.30890	-0.63210	2.99360	2.29090	HepG2	SF3A3
SCRN2	ENSG00000141295.9	394.54220	553.93280	-0.48950	4.12930	3.43000	HepG2	SF3B4
SCRN2	ENSG00000141295.9	621.55070	420.71290	0.56290	6.58200	5.57320	HepG2	SLBP
SCRN2	ENSG00000141295.9	360.27590	252.69720	0.51160	2.35910	1.48150	HepG2	SMNDC1
SCRN2	ENSG00000141295.9	230.63070	667.21580	-1.53260	32.95200	31.72160	HepG2	SRFBP1
SCRN2	ENSG00000141295.9	382.70680	578.18530	-0.59530	5.94200	5.31430	HepG2	SRSF1
SCRN2	ENSG00000141295.9	244.90230	433.22270	-0.82290	8.51550	7.49450	HepG2	SRSF5
SCRN2	ENSG00000141295.9	363.68450	215.22990	0.75670	6.76040	5.75020	HepG2	SRSF7
SCRN2	ENSG00000141295.9	190.47510	470.38390	-1.30420	20.49460	19.24810	HepG2	SRSF9
SCRN2	ENSG00000141295.9	858.19970	579.27620	0.56700	7.75050	6.97720	HepG2	SSB
SCRN2	ENSG00000141295.9	370.41880	519.69350	-0.48850	3.87240	3.22770	HepG2	TAF15
SCRN2	ENSG00000141295.9	458.19160	226.28890	1.01770	9.51700	8.68700	HepG2	TIAL1
SCRN2	ENSG00000141295.9	349.02930	228.39550	0.61170	3.99400	3.34070	HepG2	TRIM56
SCRN2	ENSG00000141295.9	557.57060	428.66080	0.37920	2.34960	1.55150	HepG2	TUFM
SCRN2	ENSG00000141295.9	153.28320	292.09540	-0.93020	5.13380	4.29250	HepG2	U2AF1
SCRN2	ENSG00000141295.9	226.53180	155.57940	0.54200	2.10670	1.44560	HepG2	UCHL5
SCRN2	ENSG00000141295.9	422.75390	328.40650	0.36420	2.38110	1.72530	HepG2	UPF1
SCRN2	ENSG00000141295.9	580.33600	241.12990	1.26700	9.82160	7.86790	HepG2	UPF2
SCRN2	ENSG00000141295.9	221.94420	317.06490	-0.51460	3.09350	2.46660	HepG2	UTP3
SCRN2	ENSG00000141295.9	269.76970	171.64450	0.65220	3.01210	1.86290	HepG2	XPO5
SCRN2	ENSG00000141295.9	660.51470	259.28190	1.34900	15.09590	13.43410	HepG2	XRN2
SCRN2	ENSG00000141295.9	239.46990	361.18550	-0.59290	4.91790	4.24150	HepG2	ZNF622
SCRN2	ENSG00000141295.9	135.83240	233.80300	-0.78350	4.16550	2.68100	K562	AARS
SCRN2	ENSG00000141295.9	700.04580	407.46430	0.78070	11.18170	10.13580	K562	AGGF1
SCRN2	ENSG00000141295.9	448.00060	330.63050	0.43820	3.29130	1.62450	K562	AKAP1
SCRN2	ENSG00000141295.9	623.90140	447.76080	0.47850	3.73230	2.55190	K562	AKAP8
SCRN2	ENSG00000141295.9	733.90910	423.98980	0.79150	9.07550	7.81270	K562	AKAP8L
SCRN2	ENSG00000141295.9	384.73300	544.35810	-0.50070	2.60480	2.03120	K562	AQR
SCRN2	ENSG00000141295.9	632.31830	444.87620	0.50710	4.95230	3.69210	K562	ATP5C1
SCRN2	ENSG00000141295.9	441.94520	320.31840	0.46430	3.25980	2.21580	K562	BCLAF1
SCRN2	ENSG00000141295.9	205.88030	125.74720	0.71120	3.00820	2.09660	K562	BOP1
SCRN2	ENSG00000141295.9	257.87490	133.70150	0.94760	4.97240	3.92710	K562	CPSF6
SCRN2	ENSG00000141295.9	505.26350	354.97770	0.50920	4.16390	1.94060	K562	DDX24
SCRN2	ENSG00000141295.9	489.15810	335.01630	0.54600	4.22260	2.89530	K562	DDX3X
SCRN2	ENSG00000141295.9	247.94900	409.84570	-0.72500	6.77700	5.82210	K562	DDX47
SCRN2	ENSG00000141295.9	529.99110	339.66320	0.64180	6.48430	4.19650	K562	DDX6
SCRN2	ENSG00000141295.9	105.18800	227.31950	-1.11180	4.76160	3.40370	K562	EIF3A
SCRN2	ENSG00000141295.9	126.98900	222.10790	-0.80660	3.92840	2.55670	K562	FKBP4
SCRN2	ENSG00000141295.9	192.34170	363.99690	-0.92030	8.54890	7.55630	K562	FXR1
SCRN2	ENSG00000141295.9	40.89680	141.14320	-1.78710	6.48560	5.30090	K562	G3BP2
SCRN2	ENSG00000141295.9	668.43970	537.86580	0.31350	2.23090	1.42880	K562	HNRNPU
SCRN2	ENSG00000141295.9	415.82880	259.87230	0.67810	3.88030	2.58200	K562	IGF2BP2
SCRN2	ENSG00000141295.9	600.73410	449.94270	0.41690	2.71330	1.89700	K562	KIF1C
SCRN2	ENSG00000141295.9	517.90350	368.60270	0.49050	4.69700	3.75870	K562	NSUN2
SCRN2	ENSG00000141295.9	363.72820	251.88510	0.53000	3.06320	1.54400	K562	NUSAP1
SCRN2	ENSG00000141295.9	502.78530	291.85780	0.78460	3.29190	2.18420	K562	PABPN1
SCRN2	ENSG00000141295.9	201.11210	321.62390	-0.67740	3.54770	2.60640	K562	PCBP3
SCRN2	ENSG00000141295.9	172.90460	246.69010	-0.51270	2.55360	1.78680	K562	POLR2G
SCRN2	ENSG00000141295.9	306.55420	192.24140	0.67310	2.34770	1.59380	K562	PPIG
SCRN2	ENSG00000141295.9	148.36360	245.09710	-0.72420	3.41480	2.57960	K562	PRPF8
SCRN2	ENSG00000141295.9	363.76960	229.37230	0.66520	4.46820	3.27440	K562	PSIP1
SCRN2	ENSG00000141295.9	486.32540	712.14860	-0.55030	2.38140	1.62550	K562	PUF60
SCRN2	ENSG00000141295.9	927.94950	420.44800	1.14200	17.26590	15.95180	K562	PUS1
SCRN2	ENSG00000141295.9	675.26890	409.69100	0.72080	8.73390	7.70710	K562	RBM15
SCRN2	ENSG00000141295.9	304.52020	209.27540	0.54100	2.95270	1.92750	K562	RCC2
SCRN2	ENSG00000141295.9	285.89470	198.38720	0.52710	2.45000	1.49930	K562	SRFBP1
SCRN2	ENSG00000141295.9	192.22590	260.01790	-0.43580	1.92440	1.32180	K562	SRSF1
SCRN2	ENSG00000141295.9	401.33550	245.60800	0.70840	5.31670	3.77380	K562	SRSF5
SCRN2	ENSG00000141295.9	467.83590	338.49060	0.46680	3.63190	2.27930	K562	SRSF7
SCRN2	ENSG00000141295.9	136.27170	247.44540	-0.86060	5.51130	4.34430	K562	SYNCRIP
SCRN2	ENSG00000141295.9	454.92840	263.11960	0.78980	5.89990	4.84040	K562	TARDBP
SCRN2	ENSG00000141295.9	344.79330	253.81780	0.44180	2.33990	1.59500	K562	TIA1
SCRN2	ENSG00000141295.9	315.81460	220.61750	0.51740	2.43330	1.55890	K562	TIAL1
SCRN2	ENSG00000141295.9	374.01630	249.15480	0.58600	3.48240	2.22810	K562	TRA2A
SCRN2	ENSG00000141295.9	336.94270	234.38070	0.52350	2.70670	1.77310	K562	TRIM56
SCRN2	ENSG00000141295.9	539.30540	390.84090	0.46440	3.12380	2.36210	K562	UPF1
SCRN2	ENSG00000141295.9	439.84150	334.42430	0.39520	2.36640	1.55490	K562	WDR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SCRN2 is not available on ENCORE database.

5 RBPs can affect the splicing of SCRN2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SCRN2	ENSG00000141295.9	chr17	-	45917556	45917738	45916809	45917009	45918035	45918539	-0.33500	0.00038	0.08707	excluded	K562	PCBP1
SE	SCRN2	ENSG00000141295.9	chr17	-	45917556	45917738	45916809	45917009	45918035	45918539	-0.13700	0.00420	0.08393	excluded	HepG2	HNRNPK
A3SS	SCRN2	ENSG00000141295.9	chr17	-	45915896	45916085	45915896	45916062	45916156	45916372	0.19100	0.00084	0.06140	longer	HepG2	SF3A3
A3SS	SCRN2	ENSG00000141295.9	chr17	-	45916809	45917224	45916809	45917009	45917556	45917738	0.26400	0.00006	0.00876	longer	HepG2	HNRNPK
A3SS	SCRN2	ENSG00000141295.9	chr17	-	45915896	45916085	45915896	45916062	45916156	45916372	0.44200	0.00000	0.00018	longer	HepG2	RBM22
A3SS	SCRN2	ENSG00000141295.9	chr17	-	45916809	45917224	45916809	45917009	45917556	45917738	0.34700	0.00104	0.08251	longer	HepG2	RBM22
A3SS	SCRN2	ENSG00000141295.9	chr17	-	45916809	45917224	45916809	45917009	45917556	45917738	0.62400	0.00004	0.04120	longer	K562	FMR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SCRN2

General Information

Functions

Localization

Domains (AlphaFold: SCRN2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SCRN2 is not avaliable on ENCORE database.

14 proteins are bound to SCRN2 RNA:

eCLIP assay for SCRN2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SCRN2 is not available on ENCORE database.

94 RBPs can affect the gene expression of SCRN2 :

The Knockdown/knockout RNA-Seq assay for SCRN2 is not available on ENCORE database.

5 RBPs can affect the splicing of SCRN2 :

The Knockdown/knockout RNA-Seq assay for SCRN2 is not avaliable on ENCORE database.