RTN4R

General Information

Gene Name : RTN4R
Gene ID : ENSG00000040608.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RTN4R)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RTN4R	ENSG00000040608.13	0.00	0.02	0.01	ENCSR000AEF
HepG2	RTN4R	ENSG00000040608.13	0.47	0.00	0.23	ENCSR985KAT
K562	RTN4R	ENSG00000040608.13	0.33	0.01	0.17	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RTN4R is not avaliable on ENCORE database.

Proteins bound to RNA

RTN4R RNA is bound by 1 proteins.

CanvasJS.com

eCLIP assay for RTN4R is not avaliable on ENCORE database.

1 proteins are bound to RTN4R RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	20229140	20229226	-	3'-UTR,intron-Distal	5.51628	11.17322	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 1 of 1 entries

eCLIP assay for RTN4R is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RTN4R is not available on ENCORE database.
52 RBPs can affect the levels of RTN4R.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RTN4R is not available on ENCORE database.

52 RBPs can affect the gene expression of RTN4R :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RTN4R	ENSG00000040608.9	141.54200	25.73370	2.45940	17.15690	15.66060	K562	RBM15
RTN4R	ENSG00000040608.9	189.26130	26.63330	2.82900	16.72650	14.87410	K562	AKAP8L
RTN4R	ENSG00000040608.9	66.67990	6.35500	3.39120	11.21750	8.91340	K562	CSTF2
RTN4R	ENSG00000040608.9	90.38050	25.59390	1.82010	7.58170	6.70780	K562	AGGF1
RTN4R	ENSG00000040608.9	60.10580	0.99440	5.91740	7.67720	6.69580	HepG2	DDX6
RTN4R	ENSG00000040608.9	72.87020	8.37670	3.12080	7.53690	5.92660	K562	BCLAF1
RTN4R	ENSG00000040608.9	108.96490	26.77990	2.02450	8.25050	5.72720	K562	UTP18
RTN4R	ENSG00000040608.9	46.56080	7.23210	2.68650	7.05930	5.69150	K562	MAGOH
RTN4R	ENSG00000040608.9	96.17780	31.65780	1.60300	7.01220	5.44080	K562	MBNL1
RTN4R	ENSG00000040608.9	150.87280	65.07180	1.21310	6.56510	4.87780	K562	DDX3X
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 55 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RTN4R

General Information

Functions

Localization

Domains (AlphaFold: RTN4R)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RTN4R is not avaliable on ENCORE database.

1 proteins are bound to RTN4R RNA:

eCLIP assay for RTN4R is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RTN4R is not available on ENCORE database.

52 RBPs can affect the gene expression of RTN4R :

The Knockdown/knockout RNA-Seq assay for RTN4R is not available on ENCORE database.

No RBPs affect the alternative splcing events of RTN4R on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RTN4R is not avaliable on ENCORE database.