RPA3-AS1

General Information

Gene Name : RPA3-AS1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPA3-AS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPA3-AS1 is not avaliable on ENCORE database.

Proteins bound to RNA

RPA3-AS1 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for RPA3-AS1 is not avaliable on ENCORE database.

10 proteins are bound to RPA3-AS1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	7742330	7742515	+	intron-Distal	4.03115	13.08623	K562	KHSRP
chr7	7745020	7745127	+	intron-Distal	5.30942	12.29181	K562	KHSRP
chr7	8019562	8019620	+	intron-Distal	5.42253	8.88784	K562	PTBP1
chr7	8020909	8020974	+	intron-Distal,intron-Proximal	5.91528	8.42544	K562	PTBP1
chr7	7744851	7744920	+	intron-Distal	4.86607	6.94732	K562	KHSRP
chr7	7714937	7715025	+	intron-Distal	4.62229	6.32237	HepG2	SUGP2
chr7	7738679	7738752	+	intron-Distal	4.66060	6.19184	HepG2	ILF3
chr7	8011961	8012046	+	intron-Distal	3.64690	5.63970	K562	TARDBP
chr7	7802010	7802076	+	intron-Distal	3.32957	5.60020	HepG2	QKI
chr7	7728409	7728489	+	intron-Distal	3.48208	5.40624	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 28 entries

eCLIP assay for RPA3-AS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPA3-AS1 is not available on ENCORE database.
57 RBPs can affect the levels of RPA3-AS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPA3-AS1 is not available on ENCORE database.

57 RBPs can affect the gene expression of RPA3-AS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPA3-AS1	ENSG00000219545.5	683.53340	327.90830	1.05960	21.42210	20.25280	HepG2	ZNF622
RPA3-AS1	ENSG00000219545.5	145.99340	433.37420	-1.56970	22.30070	19.68980	K562	MATR3
RPA3-AS1	ENSG00000219545.5	233.70640	432.78560	-0.88900	10.33430	9.26090	HepG2	SUCLG1
RPA3-AS1	ENSG00000219545.5	83.69810	251.28870	-1.58610	10.10970	7.53520	HepG2	TRA2A
RPA3-AS1	ENSG00000219545.5	189.41680	367.16420	-0.95490	6.59880	5.63970	HepG2	NCBP2
RPA3-AS1	ENSG00000219545.5	120.12080	243.06860	-1.01690	6.58370	5.20420	K562	METAP2
RPA3-AS1	ENSG00000219545.5	186.29280	304.87050	-0.71060	5.62960	4.87780	HepG2	TRIM56
RPA3-AS1	ENSG00000219545.5	242.69470	425.72440	-0.81080	6.63240	4.85770	K562	NELFE
RPA3-AS1	ENSG00000219545.5	248.67840	419.34800	-0.75390	5.20620	4.42830	HepG2	ETF1
RPA3-AS1	ENSG00000219545.5	106.78010	224.67100	-1.07320	5.13740	4.09950	HepG2	RRP9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPA3-AS1 is not available on ENCORE database.

7 RBPs can affect the splicing of RPA3-AS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RPA3-AS1	ENSG00000219545.5	chr7	+	7715732	7715839	7712939	7713084	7841300	7841374	0.51700	0.00000	0.00000	included	K562	MATR3
SE	RPA3-AS1	ENSG00000219545.5	chr7	+	7715732	7715839	7712939	7713084	7841300	7841374	0.28100	0.00003	0.00123	included	HepG2	SRSF1
SE	RPA3-AS1	ENSG00000219545.5	chr7	+	7715732	7715839	7712939	7713084	7841300	7841374	0.11500	0.00022	0.02347	included	HepG2	TBRG4
SE	RPA3-AS1	ENSG00000219545.5	chr7	+	7715732	7715839	7712939	7713084	7841300	7841374	-0.11400	0.00027	0.04509	excluded	K562	ZC3H8
SE	RPA3-AS1	ENSG00000219545.5	chr7	+	7715732	7715839	7712939	7713084	7841300	7841374	0.36700	0.00039	0.02079	included	HepG2	MATR3
SE	RPA3-AS1	ENSG00000219545.5	chr7	+	7715732	7715839	7712939	7713084	7841300	7841374	0.20500	0.00052	0.05666	included	HepG2	TAF15
SE	RPA3-AS1	ENSG00000219545.5	chr7	+	7715732	7715839	7712939	7713084	7841300	7841374	0.06500	0.00111	0.09237	included	HepG2	LARP4
SE	RPA3-AS1	ENSG00000219545.5	chr7	+	7715732	7715839	7712939	7713084	7841300	7841374	0.07000	0.00284	0.06853	included	HepG2	SF3A3

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPA3-AS1

General Information

Functions

Localization

Domains (AlphaFold: RPA3-AS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPA3-AS1 is not avaliable on ENCORE database.

10 proteins are bound to RPA3-AS1 RNA:

eCLIP assay for RPA3-AS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPA3-AS1 is not available on ENCORE database.

57 RBPs can affect the gene expression of RPA3-AS1 :

The Knockdown/knockout RNA-Seq assay for RPA3-AS1 is not available on ENCORE database.

7 RBPs can affect the splicing of RPA3-AS1 :

The Knockdown/knockout RNA-Seq assay for RPA3-AS1 is not avaliable on ENCORE database.