PRPF38A

General Information

Gene Name : PRPF38A
Gene ID : ENSG00000134748.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRPF38A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRPF38A	ENSG00000134748.12	35.54	52.29	43.91	ENCSR000AEF
HepG2	PRPF38A	ENSG00000134748.12	44.36	45.22	44.79	ENCSR985KAT
K562	PRPF38A	ENSG00000134748.12	86.39	89.19	87.79	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRPF38A is not avaliable on ENCORE database.

Proteins bound to RNA

PRPF38A RNA is bound by 22 proteins.

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eCLIP assay for PRPF38A is not avaliable on ENCORE database.

22 proteins are bound to PRPF38A RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	52879587	52879663	+	CDS	3.22267	19.54554	K562	ZNF622
chr1	52870321	52870408	+	5'-UTR	5.16507	18.78695	K562	U2AF2
chr1	52871296	52871359	+	CDS,intron-Proximal	6.33826	16.66865	K562	SF3B4
chr1	52870549	52870598	+	CDS,intron-Proximal	3.80731	11.47097	K562	AQR
chr1	52879550	52879664	+	CDS,intron-Proximal	3.05808	10.89698	K562	DDX24
chr1	52874411	52874475	+	intron-Distal,intron-Proximal	4.41939	10.81737	K562	TIA1
chr1	52878257	52878290	+	CDS	4.56780	10.28502	K562	ZNF622
chr1	52880556	52880574	+	intron-Proximal	5.78459	9.95272	K562	AQR
chr1	52870355	52870430	+	5'-UTR,CDS	3.66191	9.52855	K562	GRWD1
chr1	52878022	52878057	+	intron-Distal	3.79044	9.27366	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 55 entries

eCLIP assay for PRPF38A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PRPF38A is not available on ENCORE database.
71 RBPs can affect the levels of PRPF38A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRPF38A is not available on ENCORE database.

71 RBPs can affect the gene expression of PRPF38A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRPF38A	ENSG00000134748.12	453.30490	1164.82050	-1.36160	49.54750	47.97740	HepG2	ZNF622
PRPF38A	ENSG00000134748.12	8160.02750	3654.02680	1.15900	31.39250	29.54110	K562	PUS1
PRPF38A	ENSG00000134748.12	6179.07530	3560.53040	0.79520	25.99880	24.10370	K562	RBM15
PRPF38A	ENSG00000134748.12	1553.78410	921.62820	0.75340	17.51690	16.54190	HepG2	SRSF1
PRPF38A	ENSG00000134748.12	351.33980	843.37240	-1.26330	17.42460	15.65890	HepG2	PABPC4
PRPF38A	ENSG00000134748.12	3029.80180	4541.24140	-0.58390	14.89720	13.10940	K562	SF3A3
PRPF38A	ENSG00000134748.12	4729.55190	2983.84490	0.66440	13.72370	12.15070	K562	SRSF1
PRPF38A	ENSG00000134748.12	4819.74250	3541.17850	0.44460	11.74450	10.66940	K562	AGGF1
PRPF38A	ENSG00000134748.12	5826.38070	3684.79590	0.66090	12.06060	10.56560	K562	AKAP8L
PRPF38A	ENSG00000134748.12	2963.03740	4353.63040	-0.55510	9.84420	8.34960	K562	CPSF6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 81 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PRPF38A is not available on ENCORE database.

7 RBPs can affect the splicing of PRPF38A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PRPF38A	ENSG00000134748.12	chr1	+	52880292	52880319	52879480	52879663	52880433	52880531	-0.09000	0.00000	0.00000	excluded	K562	AQR
SE	PRPF38A	ENSG00000134748.12	chr1	+	52870931	52870985	52870235	52870551	52871351	52871511	0.06000	0.00000	0.00021	included	K562	SUPV3L1
SE	PRPF38A	ENSG00000134748.12	chr1	+	52870931	52870985	52870235	52870551	52871351	52871385	0.07700	0.00000	0.00000	included	K562	TARDBP
SE	PRPF38A	ENSG00000134748.12	chr1	+	52870931	52870985	52870235	52870551	52871351	52871511	0.07500	0.00000	0.00000	included	K562	HNRNPU
A3SS	PRPF38A	ENSG00000134748.12	chr1	+	52876756	52876872	52876786	52876872	52874205	52874362	0.06600	0.00000	0.00000	longer	K562	AQR
SE	PRPF38A	ENSG00000134748.12	chr1	+	52880292	52880319	52879550	52879663	52880433	52880531	-0.12700	0.00002	0.00055	excluded	HepG2	U2AF2
SE	PRPF38A	ENSG00000134748.12	chr1	+	52880292	52880319	52879550	52879663	52880433	52880531	-0.10000	0.00051	0.01155	excluded	HepG2	U2AF1
SE	PRPF38A	ENSG00000134748.12	chr1	+	52870931	52870985	52870235	52870551	52871351	52871511	0.06300	0.00138	0.05507	included	HepG2	HNRNPU
SE	PRPF38A	ENSG00000134748.12	chr1	+	52880292	52880319	52879550	52879663	52880433	52880531	-0.07100	0.00175	0.04735	excluded	HepG2	SF3A3
SE	PRPF38A	ENSG00000134748.12	chr1	+	52876835	52876872	52871351	52871385	52878185	52878296	0.06400	0.00349	0.03460	included	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRPF38A

General Information

Functions

Localization

Domains (AlphaFold: PRPF38A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRPF38A is not avaliable on ENCORE database.

22 proteins are bound to PRPF38A RNA:

eCLIP assay for PRPF38A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRPF38A is not available on ENCORE database.

71 RBPs can affect the gene expression of PRPF38A :

The Knockdown/knockout RNA-Seq assay for PRPF38A is not available on ENCORE database.

7 RBPs can affect the splicing of PRPF38A :

The Knockdown/knockout RNA-Seq assay for PRPF38A is not avaliable on ENCORE database.