PDAP1

General Information

Gene Name : PDAP1
Gene ID : ENSG00000106244.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PDAP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PDAP1	ENSG00000106244.12	83.36	136.17	109.76	ENCSR000AEF
HepG2	PDAP1	ENSG00000106244.12	157.59	110.43	134.01	ENCSR985KAT
K562	PDAP1	ENSG00000106244.12	256.88	211.73	234.31	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PDAP1 is not avaliable on ENCORE database.

Proteins bound to RNA

PDAP1 RNA is bound by 43 proteins.

CanvasJS.com

eCLIP assay for PDAP1 is not avaliable on ENCORE database.

43 proteins are bound to PDAP1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	98993856	98993876	-	3'-UTR,intron-Distal	5.33238	49.05196	K562	PABPC4
chr7	99001019	99001103	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.06354	36.99272	K562	UCHL5
chr7	98997984	98998040	-	3'-UTR,CDS,intron-Distal	3.92205	35.48329	K562	UCHL5
chr7	98995495	98995602	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.25112	35.41020	K562	PUM1
chr7	98994098	98994130	-	3'-UTR,intron-Distal,intron-Proximal	4.61101	33.93141	K562	UCHL5
chr7	99002485	99002554	-	CDS,intron-Distal	4.71763	33.66418	K562	UCHL5
chr7	98993876	98993903	-	3'-UTR,intron-Distal	4.57128	33.43327	K562	PABPC4
chr7	98994057	98994098	-	3'-UTR,intron-Distal,intron-Proximal	4.43768	31.46988	K562	UCHL5
chr7	98994067	98994135	-	3'-UTR,intron-Distal,intron-Proximal	3.81432	31.34166	K562	GTF2F1
chr7	99001510	99001618	-	intron-Distal	5.36484	29.43167	HepG2	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 142 entries

eCLIP assay for PDAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PDAP1 is not available on ENCORE database.
94 RBPs can affect the levels of PDAP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PDAP1 is not available on ENCORE database.

94 RBPs can affect the gene expression of PDAP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PDAP1	ENSG00000106244.8	868.52330	2275.65540	-1.38960	69.64910	68.00350	HepG2	SRFBP1
PDAP1	ENSG00000106244.8	2716.53110	5471.35590	-1.01010	23.26380	21.74740	K562	AQR
PDAP1	ENSG00000106244.8	1168.16130	2014.82600	-0.78640	18.64840	17.54620	HepG2	RBM22
PDAP1	ENSG00000106244.8	1231.56230	1975.77890	-0.68190	18.00130	16.93590	HepG2	SSB
PDAP1	ENSG00000106244.8	981.92900	1803.26800	-0.87690	18.85650	16.70000	K562	U2AF2
PDAP1	ENSG00000106244.8	3578.27880	5522.12880	-0.62600	18.40220	16.45010	K562	SF3A3
PDAP1	ENSG00000106244.8	1124.17740	2132.17190	-0.92350	17.02520	15.72290	HepG2	BOP1
PDAP1	ENSG00000106244.8	4218.08440	5596.44470	-0.40790	16.67960	15.05690	K562	NSUN2
PDAP1	ENSG00000106244.8	3839.81560	2546.29280	0.59250	15.10190	13.79990	K562	FXR1
PDAP1	ENSG00000106244.8	827.20220	1801.17680	-1.12260	14.35990	12.46750	K562	G3BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 108 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PDAP1 is not available on ENCORE database.

5 RBPs can affect the splicing of PDAP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	PDAP1	ENSG00000106244.8	chr7	-	99001020	99001206			99001020	99001128	99002484	99002576	0.06100	0.00000	0.00000	longer	K562	AQR
MXE	PDAP1	ENSG00000106244.8	chr7	-	98997925	98998047	99002484	99002576	98995484	98995636	99006158	99006452	0.11000	0.00001	0.00046	1included	K562	PRPF8
A3SS	PDAP1	ENSG00000106244.8	chr7	-	99001020	99001148			99001020	99001128	99002484	99002576	0.06200	0.00005	0.00417	longer	K562	U2AF1
MXE	PDAP1	ENSG00000106244.8	chr7	-	98997925	98998047	99002484	99002576	98995484	98995636	99006158	99006452	0.09000	0.00021	0.01003	1included	K562	EFTUD2
MXE	PDAP1	ENSG00000106244.8	chr7	-	99001020	99001148	99002484	99002576	98995484	98995636	99006158	99006213	-0.05700	0.00043	0.01010	2included	K562	SF3B4

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PDAP1

General Information

Functions

Localization

Domains (AlphaFold: PDAP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PDAP1 is not avaliable on ENCORE database.

43 proteins are bound to PDAP1 RNA:

eCLIP assay for PDAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PDAP1 is not available on ENCORE database.

94 RBPs can affect the gene expression of PDAP1 :

The Knockdown/knockout RNA-Seq assay for PDAP1 is not available on ENCORE database.

5 RBPs can affect the splicing of PDAP1 :

The Knockdown/knockout RNA-Seq assay for PDAP1 is not avaliable on ENCORE database.