LAPTM4B

General Information

Gene Name       : LAPTM4B
Gene ID             : ENSG00000104341.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LAPTM4B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LAPTM4BENSG00000104341.160.000.080.04ENCSR000AEF
HepG2LAPTM4BENSG00000104341.16133.08123.16128.12ENCSR985KAT
K562LAPTM4BENSG00000104341.16155.80141.61148.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LAPTM4B is not avaliable on ENCORE database.



Proteins bound to RNA
  • LAPTM4B RNA is bound by 27 proteins.  







eCLIP assay for LAPTM4B is not avaliable on ENCORE database.





27 proteins are bound to LAPTM4B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr89886377398863824+3'-UTR4.435995.48435HepG2TIA1
chr89886431498864371+3'-UTR4.964968.31731HepG2SUB1
chr89886382598863883+3'-UTR4.328167.50654HepG2TIAL1
chr89886365998863734+3'-UTR,CDS3.063387.75513HepG2SND1
chr89886419298864248+3'-UTR4.220973.19668HepG2UPF1
chr89886478398864822+3'-UTR4.851515.45041K562PUM2
chr89886379298863826+3'-UTR4.3565815.57504K562TIA1
chr89886392898863987+3'-UTR3.258237.42660K562PABPC4
chr89886459498864637+3'-UTR3.735349.92538K562YBX3
chr89886405998864108+3'-UTR3.8290439.96529K562PABPC4
chr89886383298863886+3'-UTR3.514817.26120K562TIA1
chr89886382898863877+3'-UTR3.470609.04901HepG2FUBP3
chr89886387398863927+3'-UTR3.3327221.49730HepG2LARP4
chr89886438798864487+3'-UTR4.2514118.03676K562YBX3
chr89886426598864296+3'-UTR4.407695.01572HepG2SUB1
chr89886370698863738+3'-UTR3.936308.05708K562PABPC4
chr89886392998864004+3'-UTR3.8327214.12906HepG2DDX55
chr89886377998863792+3'-UTR4.9744421.13189K562TIA1
chr89886378198863929+3'-UTR3.5378021.40560HepG2DDX55
chr89886365898863708+3'-UTR,CDS3.815098.69097K562IGF2BP2
chr89886424898864357+3'-UTR3.963696.10933HepG2UPF1
chr89886365998863705+3'-UTR,CDS4.1271413.11837HepG2RPS3
chr89886451798864577+3'-UTR5.380475.74792HepG2SUB1
chr89886371298863757+3'-UTR3.027285.41581K562IGF2BP2
chr89886430798864369+3'-UTR3.6083010.91905K562YBX3
chr89886370598863747+3'-UTR4.3518311.73818HepG2RPS3
chr89886381898863873+3'-UTR3.3399420.90361HepG2LARP4
chr89886434298864373+3'-UTR3.348224.91593K562FAM120A
chr89878818798788248+5'-UTR,CDS3.395198.73667K562FTO
chr89878808198788183+5'-UTR,CDS4.6427435.26253K562DDX3X
chr89878803098788081+5'-UTR,CDS4.1694512.98309K562DDX3X
chr89878819898788234+5'-UTR,CDS4.585295.20509K562YBX3
chr89878807398788163+5'-UTR,CDS3.715197.66248K562DROSHA
chr89878806198788176+5'-UTR,CDS4.3018432.91496HepG2RPS3
chr89878818798788251+5'-UTR,CDS4.0080117.66512K562DDX3X
chr89878819398788238+5'-UTR,CDS5.6852058.70296HepG2DDX3X
chr89878807298788173+5'-UTR,CDS4.761525.17373HepG2FTO
chr89878814498788187+5'-UTR,CDS3.195765.18420K562FTO
chr89878803398788060+5'-UTR,CDS5.0700734.01593HepG2DDX3X
chr89878807398788174+5'-UTR,CDS3.565704.65702K562GEMIN5
chr89878806098788193+5'-UTR,CDS5.90231400.00000HepG2DDX3X
chr89883728598837357+CDS,intron-Proximal4.0904227.20514K562SND1
chr89886362498863646+CDS,intron-Proximal5.7512612.88556K562SND1
chr89883736098837381+CDS3.934954.66892HepG2SND1
chr89881766198817693+CDS,intron-Proximal3.236447.55931K562DDX3X
chr89883136798831386+CDS,intron-Proximal3.065528.43273K562SND1
chr89878825198788333+CDS3.0089916.35747K562DDX3X
chr89882830398828371+CDS3.7097622.38579K562SND1
chr89886362398863659+CDS,intron-Proximal5.371718.48839HepG2SND1
chr89878825498788327+CDS3.733889.66228HepG2RPS3
chr89881760398817661+CDS3.6273319.99482K562DDX3X
chr89882830698828403+CDS3.589688.13045K562IGF2BP1
chr89883144698831466+CDS3.469764.29472K562IGF2BP1
chr89878825798788331+CDS5.2514382.83268HepG2DDX3X
chr89883728798837356+CDS3.470649.30348K562TIA1
chr89881760498817645+CDS4.397164.60263HepG2LIN28B
chr89881760598817653+CDS5.024947.60539K562LIN28B
chr89881765098817691+CDS3.488187.51320K562SND1
chr89886364698863700+CDS3.7856210.69038K562SND1
chr89882837198828408+CDS3.1484814.92475K562SND1
chr89878829298788333+CDS3.500063.67576K562IGF2BP2
chr89882756198827629+CDS3.6867416.44809K562SND1
chr89883145598831466+CDS3.042428.94371K562SND1
chr89883735798837381+CDS4.8041313.11785K562SND1
chr89883144598831455+CDS3.017395.56871K562SND1
chr89883728598837361+CDS,intron-Proximal3.510016.41194K562IGF2BP1
chr89884678198846852+intron-Distal4.331515.30489K562TARDBP
chr89883764798837723+intron-Distal3.596188.26817K562KHSRP
chr89878879898788870+intron-Distal3.052875.15666K562NONO
chr89879108598791140+intron-Distal4.067293.80512K562CSTF2T
chr89881770298817868+intron-Distal,intron-Proximal3.199704.76426K562PRPF8
chr89884407698844205+intron-Distal4.288014.51377K562HNRNPM
chr89884397298844039+intron-Distal4.344864.38558HepG2HNRNPM
chr89883782698837928+intron-Distal3.549677.42482K562KHSRP
chr89878846598788511+intron-Distal3.764933.07008K562NONO
chr89884407898844150+intron-Distal4.778226.79824HepG2HNRNPM
chr89883766298837721+intron-Distal4.148933.20552HepG2KHSRP
chr89885811898858200+intron-Distal5.413899.83211HepG2PCBP2
chr89878858198788655+intron-Distal4.825586.67086K562NONO
chr89878838998788433+intron-Proximal3.795893.31905K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LAPTM4B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LAPTM4B is not available on ENCORE database.

  • 113 RBPs can affect the levels of LAPTM4B.  








The Knockdown/knockout RNA-Seq assay for LAPTM4B is not available on ENCORE database.





113 RBPs can affect the gene expression of LAPTM4B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LAPTM4BENSG00000104341.123127.929702550.170300.294502.537201.50820HepG2AATF
LAPTM4BENSG00000104341.122091.046403053.59900-0.546305.490404.21410HepG2ABCF1
LAPTM4BENSG00000104341.122724.337301716.612200.6662010.274409.21630HepG2BOP1
LAPTM4BENSG00000104341.123532.000602644.404200.417405.738604.68150HepG2CALR
LAPTM4BENSG00000104341.122905.157904472.05330-0.622308.153906.88280HepG2CIRBP
LAPTM4BENSG00000104341.122730.310301575.981300.7927013.2225011.84500HepG2CPSF6
LAPTM4BENSG00000104341.125551.533804742.016200.227304.278303.38870HepG2DAZAP1
LAPTM4BENSG00000104341.121878.894002814.70850-0.583108.497007.37880HepG2DDX21
LAPTM4BENSG00000104341.122153.085003028.33460-0.492104.408903.45430HepG2DDX55
LAPTM4BENSG00000104341.121494.895402976.88120-0.9938039.5613037.78470HepG2DKC1
LAPTM4BENSG00000104341.123523.720804500.16850-0.352902.897402.29100HepG2EIF2S1
LAPTM4BENSG00000104341.121910.829402657.43090-0.475806.840505.26890HepG2EIF3G
LAPTM4BENSG00000104341.122333.289304973.13920-1.0918018.5670016.92630HepG2EIF4A3
LAPTM4BENSG00000104341.123215.486104842.19390-0.590604.833203.93900HepG2EIF4B
LAPTM4BENSG00000104341.123611.602104678.11580-0.373308.104406.81130HepG2EIF4G1
LAPTM4BENSG00000104341.122036.722402645.15930-0.377103.567902.33470HepG2ESF1
LAPTM4BENSG00000104341.123867.060105017.91880-0.375903.306102.55300HepG2FXR1
LAPTM4BENSG00000104341.123508.233704941.75550-0.494305.490104.22310HepG2G3BP2
LAPTM4BENSG00000104341.122354.799202948.63470-0.324402.462001.50550HepG2GNB2L1
LAPTM4BENSG00000104341.121265.697501786.60110-0.497303.731502.99700HepG2GPKOW
LAPTM4BENSG00000104341.121629.368102933.27850-0.8482017.0821015.70090HepG2HNRNPA1
LAPTM4BENSG00000104341.122379.943003241.11730-0.4456010.230209.12690HepG2HNRNPU
LAPTM4BENSG00000104341.122329.031502736.31770-0.232502.355301.68520HepG2IGF2BP1
LAPTM4BENSG00000104341.122793.183303310.70180-0.245204.404703.49900HepG2ILF2
LAPTM4BENSG00000104341.122532.385303443.76750-0.443502.703701.40410HepG2ILF3
LAPTM4BENSG00000104341.122911.515405019.67170-0.7858011.6604010.34780HepG2MAGOH
LAPTM4BENSG00000104341.122750.465005047.72880-0.8760012.7878011.50370HepG2MATR3
LAPTM4BENSG00000104341.123108.505505166.60070-0.733009.918908.76340HepG2NCBP2
LAPTM4BENSG00000104341.121730.695202781.02000-0.684304.015902.68180HepG2NONO
LAPTM4BENSG00000104341.121139.746701511.71300-0.407503.343202.52060HepG2NSUN2
LAPTM4BENSG00000104341.123045.681204601.05520-0.595206.944005.80720HepG2PABPC4
LAPTM4BENSG00000104341.122293.402804617.19460-1.0095049.8849047.91680HepG2PCBP1
LAPTM4BENSG00000104341.121213.202501684.58420-0.473606.329704.51730HepG2PKM
LAPTM4BENSG00000104341.121607.990702890.82550-0.8462024.8692022.83880HepG2PPIL4
LAPTM4BENSG00000104341.123409.600604698.07920-0.4625011.5271010.56130HepG2PTBP1
LAPTM4BENSG00000104341.122713.621103169.27720-0.223903.272402.61650HepG2PUS1
LAPTM4BENSG00000104341.124276.173505088.32540-0.250903.100002.44580HepG2QKI
LAPTM4BENSG00000104341.121672.907303168.65790-0.921507.323006.20540HepG2RAVER1
LAPTM4BENSG00000104341.126305.310904799.750200.393508.160207.37960HepG2RBM22
LAPTM4BENSG00000104341.123220.349104617.91070-0.520008.530107.39580HepG2RBM25
LAPTM4BENSG00000104341.122085.259002828.83490-0.440003.460202.27460HepG2RCC2
LAPTM4BENSG00000104341.123126.528005228.58500-0.7419028.6120027.24960HepG2NELFE
LAPTM4BENSG00000104341.123216.087804869.58230-0.5985019.6738018.28680HepG2RECQL
LAPTM4BENSG00000104341.122144.662502993.87240-0.481306.377805.40130HepG2RPLP0
LAPTM4BENSG00000104341.121988.049703112.72900-0.646804.776903.55100HepG2RPS10
LAPTM4BENSG00000104341.121574.623001982.14150-0.332103.164002.51310HepG2RPS19
LAPTM4BENSG00000104341.122582.201503212.75800-0.315202.688001.89820HepG2RPS2
LAPTM4BENSG00000104341.122317.685903546.75970-0.613805.169304.07540HepG2RPS3A
LAPTM4BENSG00000104341.122293.093602886.38490-0.332006.524405.59760HepG2SAFB2
LAPTM4BENSG00000104341.121452.155201989.37400-0.454104.120402.97710HepG2SERBP1
LAPTM4BENSG00000104341.124028.484702900.623900.473802.244501.63660HepG2SF3A3
LAPTM4BENSG00000104341.123701.628104891.46640-0.402109.550508.55180HepG2SF3B4
LAPTM4BENSG00000104341.123309.125904303.70300-0.3791010.451509.22810HepG2SLBP
LAPTM4BENSG00000104341.122620.518103366.05740-0.361209.266308.19940HepG2SMN1
LAPTM4BENSG00000104341.122633.520601877.785200.487903.027802.20960HepG2SNRNP70
LAPTM4BENSG00000104341.124378.121505421.25070-0.308303.831903.27130HepG2SRFBP1
LAPTM4BENSG00000104341.123801.977505105.56680-0.4253011.8224010.99080HepG2SRSF1
LAPTM4BENSG00000104341.121852.958004707.12050-1.3450038.1677036.77600HepG2SSB
LAPTM4BENSG00000104341.124508.786805040.16510-0.160702.464301.87050HepG2SUCLG1
LAPTM4BENSG00000104341.122296.878803014.59330-0.392303.129402.41460HepG2SUPV3L1
LAPTM4BENSG00000104341.122291.425301661.550300.463605.007204.07400HepG2TARDBP
LAPTM4BENSG00000104341.121814.037903149.52050-0.7959019.8857018.76890HepG2TIAL1
LAPTM4BENSG00000104341.122537.010903177.49300-0.324805.775305.01430HepG2TRIM56
LAPTM4BENSG00000104341.122877.477704641.41920-0.689808.832307.30440HepG2UBE2L3
LAPTM4BENSG00000104341.122273.805501780.767300.352502.628701.89000HepG2UCHL5
LAPTM4BENSG00000104341.123495.397802572.406200.4422011.045009.81950HepG2UPF1
LAPTM4BENSG00000104341.122789.701502483.562800.167601.938301.41870HepG2UTP3
LAPTM4BENSG00000104341.121888.027002967.53860-0.652408.467007.21280HepG2XRN2
LAPTM4BENSG00000104341.123484.337202829.159700.300406.704005.94970HepG2ZNF622
LAPTM4BENSG00000104341.126346.056505515.730500.202202.936502.35370K562AGGF1
LAPTM4BENSG00000104341.123009.348403811.81890-0.341005.475003.29170K562AKAP1
LAPTM4BENSG00000104341.124402.128506586.26020-0.581309.132208.16640K562AQR
LAPTM4BENSG00000104341.125086.754606021.81440-0.243503.148102.17040K562ATP5C1
LAPTM4BENSG00000104341.124499.756403766.098000.256703.551102.01770K562BCCIP
LAPTM4BENSG00000104341.122879.535002366.710000.282902.116401.35950K562BOP1
LAPTM4BENSG00000104341.121236.249301858.47500-0.588106.921005.08210K562CCAR1
LAPTM4BENSG00000104341.123584.285205078.69360-0.502806.655604.72570K562CIRBP
LAPTM4BENSG00000104341.124719.168706471.45740-0.455605.453903.33400K562DDX19B
LAPTM4BENSG00000104341.122446.671203097.67370-0.340405.035203.36410K562DDX21
LAPTM4BENSG00000104341.123787.796803191.148700.247203.413601.92940K562DDX27
LAPTM4BENSG00000104341.124721.029403862.216400.289603.047901.95290K562DDX3X
LAPTM4BENSG00000104341.123623.418804581.61060-0.338506.374305.44300K562DDX47
LAPTM4BENSG00000104341.121578.775802080.45440-0.398103.409001.91620K562DHX30
LAPTM4BENSG00000104341.128353.465306176.260400.435509.269207.47370K562DKC1
LAPTM4BENSG00000104341.122035.268103356.24300-0.721607.237405.19390K562EEF2
LAPTM4BENSG00000104341.124379.804503242.996200.433404.864903.63940K562EFTUD2
LAPTM4BENSG00000104341.123306.365504242.12340-0.359506.762204.84140K562EIF2S1
LAPTM4BENSG00000104341.1211948.217604276.227501.48230101.8225099.09960K562EIF2S2
LAPTM4BENSG00000104341.121324.741101890.43340-0.513002.923501.88700K562EIF3A
LAPTM4BENSG00000104341.122666.303303472.61480-0.381202.553501.56330K562EIF3D
LAPTM4BENSG00000104341.122800.620404034.99260-0.526807.352206.01970K562EIF4A3
LAPTM4BENSG00000104341.122755.971903633.66270-0.398906.403404.51470K562EIF4B
LAPTM4BENSG00000104341.124613.634107229.25440-0.6479020.3169017.94680K562EIF4G2
LAPTM4BENSG00000104341.123738.955002560.379600.546206.702205.34810K562FMR1
LAPTM4BENSG00000104341.123540.467304196.21050-0.245103.252902.60560K562FXR1
LAPTM4BENSG00000104341.122371.766303218.50560-0.440407.487605.66910K562GLRX3
LAPTM4BENSG00000104341.128524.570105698.042100.5811010.888809.35920K562GRSF1
LAPTM4BENSG00000104341.122948.135104834.38880-0.7135015.2920013.08300K562HNRNPA1
LAPTM4BENSG00000104341.121960.757103360.11920-0.7771016.2017014.83650K562HNRNPC
LAPTM4BENSG00000104341.124504.682002626.515800.7782010.992408.84160K562HNRNPM
LAPTM4BENSG00000104341.129499.207804328.829001.1337031.0195028.70800K562HSPD1
LAPTM4BENSG00000104341.123739.158504737.94430-0.341502.335201.41520K562IGF2BP2
LAPTM4BENSG00000104341.121327.954201941.58310-0.548005.603403.47790K562ILF3
LAPTM4BENSG00000104341.126960.406305830.465400.255502.377201.40680K562MAK16
LAPTM4BENSG00000104341.122869.809004970.10120-0.7923018.2200015.79100K562MATR3
LAPTM4BENSG00000104341.129153.326406823.475800.423705.919604.49470K562MBNL1
LAPTM4BENSG00000104341.122801.741702345.371500.256402.194801.41420K562METAP2
LAPTM4BENSG00000104341.124996.209604029.278500.310203.806902.34540K562NCBP2
LAPTM4BENSG00000104341.122944.814103759.61580-0.3524010.166308.85910K562NSUN2
LAPTM4BENSG00000104341.125611.444904431.181900.340603.619602.50320K562PCBP2
LAPTM4BENSG00000104341.124723.611103555.605200.409703.591202.64300K562PCBP3
LAPTM4BENSG00000104341.126189.795807428.27730-0.263103.210701.66800K562PNPT1
LAPTM4BENSG00000104341.123664.654602727.274400.426102.085701.39010K562POLR2G
LAPTM4BENSG00000104341.125140.019303625.012500.503705.803904.54200K562PPIG
LAPTM4BENSG00000104341.125172.463703266.109800.663203.757301.56790K562PRPF6
LAPTM4BENSG00000104341.124752.168303155.799800.590508.420307.10680K562PRPF8
LAPTM4BENSG00000104341.127073.430704838.423800.5478010.035808.82480K562PTBP1
LAPTM4BENSG00000104341.126904.004008389.72250-0.281203.542402.32490K562PUM1
LAPTM4BENSG00000104341.1210720.514408220.319600.383008.225706.54680K562PUM2
LAPTM4BENSG00000104341.1210365.497605692.221900.8646018.5176017.14420K562PUS1
LAPTM4BENSG00000104341.124347.285505404.42310-0.314003.659301.80470K562RBM17
LAPTM4BENSG00000104341.123316.331304639.85530-0.484506.132104.81690K562RBM22
LAPTM4BENSG00000104341.121344.920002748.59250-1.0312027.4484024.52540K562RCC2
LAPTM4BENSG00000104341.122288.883303202.87060-0.484704.275702.31530K562RPS10
LAPTM4BENSG00000104341.122495.137903557.63530-0.511804.687402.33550K562SAFB2
LAPTM4BENSG00000104341.122699.329104017.59670-0.573703.606501.81130K562SBDS
LAPTM4BENSG00000104341.124955.745303710.028300.417608.388907.02880K562SF3A3
LAPTM4BENSG00000104341.122925.028802284.863400.356202.608001.66430K562SF3B1
LAPTM4BENSG00000104341.121449.478202047.11700-0.498105.495903.68830K562SLBP
LAPTM4BENSG00000104341.122771.402704126.36100-0.574304.095501.95510K562SMN1
LAPTM4BENSG00000104341.122039.700502605.60130-0.353303.272502.13290K562SRFBP1
LAPTM4BENSG00000104341.122050.669702897.70550-0.498804.960403.67320K562TIAL1
LAPTM4BENSG00000104341.122171.060003078.33900-0.503806.340204.77250K562TRIM56
LAPTM4BENSG00000104341.122804.573604222.88040-0.5904013.6335010.87110K562TROVE2
LAPTM4BENSG00000104341.124231.237703234.118500.387603.810302.59720K562UCHL5
LAPTM4BENSG00000104341.124501.681203986.413500.175302.386801.71690K562UPF1
LAPTM4BENSG00000104341.124084.931305131.51530-0.329103.695001.75770K562UPF2
LAPTM4BENSG00000104341.122581.155103411.02670-0.402205.052803.85280K562WDR3
LAPTM4BENSG00000104341.123092.700103547.21930-0.197802.768701.92240K562WDR43
LAPTM4BENSG00000104341.125549.693807420.21760-0.419105.317604.05600K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LAPTM4B is not available on ENCORE database.





3 RBPs can affect the splicing of LAPTM4B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSLAPTM4BENSG00000104341.12chr8+9882753198827629988275559882762998817580988176920.287000.000000.00000longerK562AQR
MXELAPTM4BENSG00000104341.12chr8+98817580988176929882755598827629987872849878833698828285988284080.080000.001070.035351includedK562UCHL5
MXELAPTM4BENSG00000104341.12chr8+9882755598827629988282859882840898817580988176929883136798831466-0.052000.000090.004382includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LAPTM4B is not avaliable on ENCORE database.