KIAA0556

General Information

Gene Name       : KIAA0556
Gene ID             : ENSG00000047578.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KIAA0556)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KIAA0556ENSG00000047578.126.147.766.95ENCSR000AEF
HepG2KIAA0556ENSG00000047578.1216.8413.5815.21ENCSR985KAT
K562KIAA0556ENSG00000047578.126.996.766.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KIAA0556 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KIAA0556 RNA is bound by 6 proteins.  







eCLIP assay for KIAA0556 is not avaliable on ENCORE database.





6 proteins are bound to KIAA0556 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162768908927689189+3'-UTR,CDS3.509894.22917HepG2PPIG
chr162768905827689174+3'-UTR,CDS3.526885.97823HepG2BCLAF1
chr162764003127640146+3'-UTR,CDS3.539585.86107HepG2PPIG
chr162764003927640153+3'-UTR,CDS,intron-Proximal3.287864.34695HepG2BCLAF1
chr162768905027689164+3'-UTR,CDS3.891863.34184HepG2GRWD1
chr162776312027763234+CDS3.927553.56019HepG2GRWD1
chr162778291927782970+CDS3.430963.32039HepG2PPIG
chr162770964527709702+CDS,intron-Proximal3.966165.52342HepG2PPIG
chr162770964727709739+CDS,intron-Proximal3.007523.17744HepG2GRWD1
chr162776310927763170+CDS3.627124.41267HepG2PPIG
chr162770978727709862+CDS,intron-Proximal3.183715.06115HepG2PRPF8
chr162778129227781339+CDS3.655754.13746HepG2PPIG
chr162776317027763246+CDS,intron-Proximal3.499724.77136HepG2PPIG
chr162769280727692853+CDS,intron-Proximal3.270003.22545HepG2PPIG
chr162761777727617908+intron-Distal4.612336.88352HepG2HNRNPL
chr162776510127765200+intron-Distal3.557074.81278HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KIAA0556 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KIAA0556 is not available on ENCORE database.

  • 77 RBPs can affect the levels of KIAA0556.  








The Knockdown/knockout RNA-Seq assay for KIAA0556 is not available on ENCORE database.





77 RBPs can affect the gene expression of KIAA0556 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KIAA0556ENSG00000047578.81055.06800623.283800.759307.483306.58320HepG2ACO1
KIAA0556ENSG00000047578.81057.79950525.410401.0094010.879609.89200HepG2AKAP1
KIAA0556ENSG00000047578.8807.74850626.218900.367103.510202.65840HepG2AKAP8L
KIAA0556ENSG00000047578.8610.14380413.013600.562903.855802.95140HepG2CIRBP
KIAA0556ENSG00000047578.8817.26830623.156500.391104.431903.62800HepG2CKAP4
KIAA0556ENSG00000047578.8344.54640481.23360-0.482003.635202.46830HepG2YBX3
KIAA0556ENSG00000047578.8788.12000630.856300.321002.736502.09700HepG2CELF1
KIAA0556ENSG00000047578.8720.49890576.451900.321703.068102.19300HepG2DDX19B
KIAA0556ENSG00000047578.8767.97470465.035300.723607.584706.51800HepG2DDX21
KIAA0556ENSG00000047578.8737.97930503.260200.552203.731603.01570HepG2DDX3X
KIAA0556ENSG00000047578.8591.70910432.412600.452402.404901.82540HepG2DDX6
KIAA0556ENSG00000047578.8566.11150468.368100.273302.006001.43390HepG2DNAJC2
KIAA0556ENSG00000047578.8648.14020415.587800.641104.779904.01260HepG2EIF2S1
KIAA0556ENSG00000047578.8645.18370459.224600.490402.939202.27940HepG2EIF4A3
KIAA0556ENSG00000047578.8725.13290447.212700.697204.404303.54760HepG2EIF4B
KIAA0556ENSG00000047578.8460.93320641.04760-0.475903.196602.32500HepG2EIF4G2
KIAA0556ENSG00000047578.81299.13030958.936700.437905.735404.92230HepG2ETF1
KIAA0556ENSG00000047578.8442.20710337.814500.388402.167101.46400HepG2FUBP3
KIAA0556ENSG00000047578.8832.02120463.486000.844007.025005.95670HepG2FXR1
KIAA0556ENSG00000047578.8758.15710429.873600.818507.623306.54500HepG2G3BP1
KIAA0556ENSG00000047578.81082.32940746.108700.536601.997401.44780HepG2GPKOW
KIAA0556ENSG00000047578.8680.31170477.050800.512004.057203.29740HepG2HNRNPA1
KIAA0556ENSG00000047578.8481.43020617.84730-0.359903.058702.35200HepG2HNRNPL
KIAA0556ENSG00000047578.8662.56700505.121700.391302.886701.91500HepG2HNRNPM
KIAA0556ENSG00000047578.8616.31640436.929500.496203.164202.44800HepG2IGF2BP2
KIAA0556ENSG00000047578.8677.63990538.442600.331602.120601.46910HepG2ILF2
KIAA0556ENSG00000047578.81383.44980930.307000.572404.273903.23710HepG2LARP4
KIAA0556ENSG00000047578.8654.08670463.648500.496403.193502.48920HepG2MAGOH
KIAA0556ENSG00000047578.8837.98850592.550200.499904.499103.48490HepG2MSI2
KIAA0556ENSG00000047578.8800.37970477.182000.746006.546905.59090HepG2NCBP2
KIAA0556ENSG00000047578.8599.33190402.608000.573906.093205.24790HepG2PCBP1
KIAA0556ENSG00000047578.8671.80700409.673000.713509.100708.22390HepG2PTBP1
KIAA0556ENSG00000047578.8983.00530681.581700.528209.019608.07990HepG2PUM1
KIAA0556ENSG00000047578.81130.68210681.074600.7312011.221109.91890HepG2PUM2
KIAA0556ENSG00000047578.8615.71050443.676800.472603.779603.06620HepG2QKI
KIAA0556ENSG00000047578.8513.58910402.668700.350902.002601.42220HepG2RBM25
KIAA0556ENSG00000047578.8792.59510577.014400.457902.601201.64010HepG2RBM27
KIAA0556ENSG00000047578.8900.67130455.923100.9821018.0970016.94840HepG2NELFE
KIAA0556ENSG00000047578.8595.62680424.636900.488104.381003.62880HepG2RECQL
KIAA0556ENSG00000047578.8611.36400832.28600-0.445003.521902.76650HepG2RPLP0
KIAA0556ENSG00000047578.8731.55700441.836300.727407.759806.79210HepG2RPS19
KIAA0556ENSG00000047578.81060.99170426.514701.3146024.8046023.33640HepG2SF3B4
KIAA0556ENSG00000047578.8796.64400547.426000.541207.606206.62080HepG2SMN1
KIAA0556ENSG00000047578.8752.17260489.843600.618604.067402.88760HepG2SMNDC1
KIAA0556ENSG00000047578.81188.98320905.237700.393303.291802.76010HepG2SRFBP1
KIAA0556ENSG00000047578.8939.72780633.950800.567808.267507.26050HepG2SRSF5
KIAA0556ENSG00000047578.8535.15000362.190300.563105.760705.01560HepG2SRSF9
KIAA0556ENSG00000047578.8618.47980785.93960-0.345703.268702.72210HepG2SSB
KIAA0556ENSG00000047578.81093.61580720.961600.6010010.853509.75930HepG2SUCLG1
KIAA0556ENSG00000047578.8515.24680400.164800.364602.525601.98690HepG2TAF15
KIAA0556ENSG00000047578.8729.51310512.182100.510204.937104.30870HepG2TIAL1
KIAA0556ENSG00000047578.8681.87140516.783200.399803.757603.12240HepG2TRIM56
KIAA0556ENSG00000047578.8980.67200663.984000.562504.179203.13950HepG2UBE2L3
KIAA0556ENSG00000047578.8858.60060673.878600.349403.268202.62710HepG2UTP3
KIAA0556ENSG00000047578.81059.30240767.651500.464507.361006.57970HepG2ZNF622
KIAA0556ENSG00000047578.8168.89980336.02320-0.992409.087608.13450K562AGGF1
KIAA0556ENSG00000047578.8261.99120369.19410-0.494903.041801.99790K562AKAP8
KIAA0556ENSG00000047578.8165.84210349.63640-1.076009.553808.25080K562AKAP8L
KIAA0556ENSG00000047578.8259.24790366.83200-0.500803.463802.43070K562ATP5C1
KIAA0556ENSG00000047578.8244.48070376.30260-0.622204.251303.13270K562DKC1
KIAA0556ENSG00000047578.8480.65830338.997300.503603.988303.14960K562EIF2S2
KIAA0556ENSG00000047578.8380.27650231.312800.717104.058902.77450K562EIF3D
KIAA0556ENSG00000047578.8294.78400169.774000.795905.302004.16710K562EIF4A3
KIAA0556ENSG00000047578.8310.91350176.557000.816306.178505.32760K562FXR1
KIAA0556ENSG00000047578.873.53540132.28020-0.847102.887702.16300K562G3BP2
KIAA0556ENSG00000047578.8459.39270229.974400.998209.723708.65960K562HNRNPC
KIAA0556ENSG00000047578.8226.30030331.44310-0.550503.562202.54770K562HNRNPU
KIAA0556ENSG00000047578.8253.95020371.09000-0.547203.562702.61360K562KIF1C
KIAA0556ENSG00000047578.8233.42690355.19330-0.605603.080401.93130K562MAK16
KIAA0556ENSG00000047578.8243.53000415.70920-0.771506.333304.84970K562MBNL1
KIAA0556ENSG00000047578.8148.49620291.37870-0.972505.267603.91430K562NAA15
KIAA0556ENSG00000047578.8146.32490210.29480-0.523201.986401.34440K562PRPF8
KIAA0556ENSG00000047578.8865.11920579.092800.579006.099304.88900K562PUF60
KIAA0556ENSG00000047578.8122.08690346.82190-1.5063013.3940012.24400K562PUS1
KIAA0556ENSG00000047578.8165.84690337.86060-1.026609.325608.26000K562RBM15
KIAA0556ENSG00000047578.8285.69890201.537100.503402.412601.40520K562NELFE
KIAA0556ENSG00000047578.8243.13040156.852600.632202.435001.50290K562RPS3
KIAA0556ENSG00000047578.8155.67940284.06130-0.867602.836501.59100K562SNRNP200
KIAA0556ENSG00000047578.8528.71200383.279900.464004.008002.90310K562SRPK2
KIAA0556ENSG00000047578.8348.48300198.199000.814005.913204.85220K562TARDBP
KIAA0556ENSG00000047578.877.27500132.41300-0.777003.004602.16720K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KIAA0556 is not available on ENCORE database.





3 RBPs can affect the splicing of KIAA0556 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKIAA0556ENSG00000047578.8chr16+2771290927713016277108002771092027715216277153190.119000.000550.05448includedHepG2DDX59
SEKIAA0556ENSG00000047578.8chr16+2771290927713016277108542771092027715216277153190.119000.000090.01040includedHepG2FTO
MXEKIAA0556ENSG00000047578.8chr16+2771080027710920277129092771301627709648277098212771521627715319-0.080000.000010.000662includedHepG2FTO
MXEKIAA0556ENSG00000047578.8chr16+27710854277109202771290927713016277096482770982127715216277153190.410000.004370.063131includedK562HNRNPC
MXEKIAA0556ENSG00000047578.8chr16+2771080027710920277129092771301627709648277098212771521627715319-0.080000.000080.012712includedHepG2DDX59

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KIAA0556 is not avaliable on ENCORE database.