KDM5D

General Information

Gene Name       : KDM5D
Gene ID             : ENSG00000012817.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KDM5D)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KDM5DENSG00000012817.150.000.000.00ENCSR000AEF
HepG2KDM5DENSG00000012817.1522.4819.4520.96ENCSR985KAT
K562KDM5DENSG00000012817.150.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KDM5D is not avaliable on ENCORE database.



Proteins bound to RNA
  • KDM5D RNA is bound by 16 proteins.  







eCLIP assay for KDM5D is not avaliable on ENCORE database.





16 proteins are bound to KDM5D RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrY2190637621906435-5'-UTR,CDS,intron-Distal3.015934.42661HepG2PPIG
chrY2186868121868739-CDS,intron-Distal3.498698.19289HepG2PPIG
chrY2190142721901484-CDS,intron-Distal3.089503.07152HepG2HLTF
chrY2186945621869510-CDS,intron-Distal4.366185.48415HepG2EIF3H
chrY2188285421882909-CDS,intron-Distal4.097849.08790HepG2BCLAF1
chrY2187163421871659-CDS,intron-Distal3.638084.34695HepG2BCLAF1
chrY2190332021903374-CDS,intron-Distal4.3460911.55759HepG2BCLAF1
chrY2189728021897355-CDS,intron-Distal3.719795.31703HepG2EIF3H
chrY2187786621877888-CDS,intron-Distal3.466163.93645HepG2PPIG
chrY2187076221870779-CDS,intron-Distal3.365155.15776HepG2BCLAF1
chrY2189728421897358-CDS,intron-Distal4.442573.59099HepG2FASTKD2
chrY2186868421868752-CDS,intron-Distal,intron-Proximal3.887517.11475HepG2BUD13
chrY2187728121877324-CDS,intron-Distal3.402226.00907HepG2PPIG
chrY2187147121871521-CDS,intron-Distal,intron-Proximal3.448273.59805HepG2SF3B4
chrY2187162721871704-CDS,intron-Distal,intron-Proximal4.9121211.38699HepG2PPIG
chrY2189455321894621-CDS,intron-Distal4.2103813.37200HepG2BCLAF1
chrY2189447221894539-CDS,intron-Distal3.025486.06509HepG2PPIG
chrY2187079521870864-CDS,intron-Distal,intron-Proximal3.546535.10069HepG2GRWD1
chrY2187134021871376-CDS,intron-Distal4.230183.59112HepG2PPIG
chrY2187772321877735-CDS,intron-Distal,intron-Proximal3.430963.32039HepG2PPIG
chrY2189372421893793-CDS,intron-Distal4.6569814.65888HepG2BCLAF1
chrY2189750621897597-CDS,intron-Distal,intron-Proximal3.087123.53729HepG2EIF3H
chrY2188290921882921-CDS,intron-Distal,intron-Proximal4.516407.53358HepG2BCLAF1
chrY2187022321870308-CDS,intron-Distal3.901348.46997HepG2PPIG
chrY2189398521894024-CDS,intron-Distal3.037895.79926HepG2BCLAF1
chrY2187832521878362-CDS,intron-Distal,intron-Proximal3.430566.19339HepG2BCLAF1
chrY2186991521869966-CDS,intron-Distal,intron-Proximal3.782293.99577HepG2BUD13
chrY2189759021897629-CDS,intron-Distal3.457786.60490HepG2BCLAF1
chrY2189393421893971-CDS,intron-Distal3.031784.09741HepG2PPIG
chrY2187221621872326-CDS,intron-Distal,intron-Proximal3.8384127.53457HepG2PRPF8
chrY2186845421868526-CDS,intron-Distal3.332067.51172HepG2PPIG
chrY2190141321901464-CDS,intron-Distal,intron-Proximal5.7844312.56307HepG2BCLAF1
chrY2189393221894007-CDS,intron-Distal3.762545.26073HepG2HLTF
chrY2189379321893816-CDS,intron-Distal3.554107.83567HepG2BCLAF1
chrY2189393121893985-CDS,intron-Distal,intron-Proximal3.5358812.82134HepG2BCLAF1
chrY2187135021871420-CDS,intron-Distal3.029383.18660HepG2PABPN1
chrY2187847921878534-CDS,intron-Distal,intron-Proximal4.539735.33445HepG2HLTF
chrY2187784121877852-CDS,intron-Distal4.788665.23259HepG2BCLAF1
chrY2187749721877605-CDS,intron-Distal,intron-Proximal3.130629.68144HepG2PPIG
chrY2188301521883058-CDS,intron-Distal,intron-Proximal4.776509.30195HepG2BCLAF1
chrY2190504921905078-CDS,intron-Distal3.609794.74886HepG2BCLAF1
chrY2189750621897590-CDS,intron-Distal,intron-Proximal5.1868012.44336HepG2BCLAF1
chrY2189726821897343-CDS,intron-Distal3.4985910.65310HepG2BCLAF1
chrY2189366621893724-CDS,intron-Distal3.777729.43524HepG2BCLAF1
chrY2187723321877277-CDS,intron-Distal,intron-Proximal3.187405.53494HepG2BCLAF1
chrY2189375621893793-CDS,intron-Distal3.756573.12746HepG2GRWD1
chrY2187018621870300-CDS,intron-Distal,intron-Proximal3.357484.00411HepG2LSM11
chrY2187225121872313-CDS,intron-Distal,intron-Proximal4.770008.09084HepG2PPIG
chrY2186939421869456-CDS,intron-Distal3.643794.00333HepG2EIF3H
chrY2186992521870040-CDS,intron-Distal,intron-Proximal3.606609.11312HepG2EFTUD2
chrY2189447521894553-CDS,intron-Distal3.012358.65288HepG2BCLAF1
chrY2187857221878599-CDS,intron-Distal,intron-Proximal3.842627.28307HepG2BCLAF1
chrY2187750221877536-CDS,intron-Distal3.507555.40132HepG2BCLAF1
chrY2188276021882776-CDS,intron-Distal4.310057.82199HepG2BCLAF1
chrY2186868721868745-CDS,intron-Distal3.639324.87412HepG2EIF3H
chrY2187832121878367-CDS,intron-Distal,intron-Proximal4.350304.42137HepG2HLTF
chrY2186847721868525-CDS,intron-Distal3.982823.19682HepG2PABPN1
chrY2187008421870150-CDS,intron-Distal,intron-Proximal3.748077.09156HepG2PRPF8
chrY2186993021869957-CDS,intron-Distal4.073673.79199HepG2PPIG
chrY2187023221870263-CDS,intron-Distal3.574596.06436HepG2BCLAF1
chrY2187076321870852-CDS,intron-Distal,intron-Proximal3.712859.58474HepG2PPIG
chrY2190361921903703-CDS,intron-Distal,intron-Proximal4.0730914.75464HepG2BCLAF1
chrY2189734321897383-CDS,intron-Distal4.602548.41475HepG2BCLAF1
chrY2187726621877313-CDS,intron-Distal4.062383.38114HepG2GRWD1
chrY2187164221871715-CDS,intron-Distal,intron-Proximal3.085295.60183HepG2U2AF2
chrY2188283321882902-CDS,intron-Distal3.018025.63808HepG2EIF3H
chrY2186868321868750-CDS,intron-Distal,intron-Proximal3.865596.15627HepG2PABPN1
chrY2187164821871703-CDS,intron-Distal,intron-Proximal3.301783.63043HepG2GRWD1
chrY2187851121878561-CDS,intron-Distal3.622869.83277HepG2BCLAF1
chrY2187855121878598-CDS,intron-Distal,intron-Proximal4.732415.52963HepG2PPIG
chrY2190629021906365-CDS,intron-Distal3.647927.83567HepG2BCLAF1
chrY2187296721873044-intron-Distal3.037334.89395HepG2SUGP2
chrY2187260121872666-intron-Distal3.643374.94813HepG2HNRNPM
chrY2188057221880634-intron-Distal3.950313.04224HepG2SUGP2
chrY2187508921875185-intron-Distal4.419643.62366HepG2HNRNPM
chrY2187791021878015-intron-Distal,intron-Proximal3.836196.36450HepG2U2AF2
chrY2189407421894127-intron-Distal,intron-Proximal4.116373.45799HepG2U2AF2
chrY2187205921872138-intron-Distal4.3365012.93761HepG2BCLAF1
chrY2187497121875028-intron-Distal3.321563.69184HepG2SUGP2
chrY2187995821880038-intron-Distal3.950313.04224HepG2SUGP2
chrY2187207721872146-intron-Distal5.435466.16445HepG2PPIG
chrY2187259421872671-intron-Distal3.825706.51675HepG2SUGP2
chrY2187261921872680-intron-Distal5.000485.72657HepG2MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KDM5D is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KDM5D is not available on ENCORE database.

  • 81 RBPs can affect the levels of KDM5D.  








The Knockdown/knockout RNA-Seq assay for KDM5D is not available on ENCORE database.





81 RBPs can affect the gene expression of KDM5D :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KDM5DENSG00000012817.112405.983701548.667200.635506.667905.28030HepG2ABCF1
KDM5DENSG00000012817.111961.653501488.911500.397702.649502.12850HepG2AKAP1
KDM5DENSG00000012817.112101.892401519.891900.467608.003506.78270HepG2AKAP8L
KDM5DENSG00000012817.111532.793301231.923000.315202.036301.35860HepG2ASCC1
KDM5DENSG00000012817.111839.674301396.872400.397203.504401.93580HepG2ATP5C1
KDM5DENSG00000012817.112593.754002151.041900.269903.653402.88430HepG2AUH
KDM5DENSG00000012817.111683.808601301.916100.371003.262302.61920HepG2BOP1
KDM5DENSG00000012817.112651.978801742.025500.606205.154203.80440HepG2CCAR1
KDM5DENSG00000012817.111742.378301170.420200.573905.942004.83770HepG2CIRBP
KDM5DENSG00000012817.112413.413801840.399900.391008.694907.49270HepG2DAZAP1
KDM5DENSG00000012817.111520.250701257.386900.273802.679301.53950HepG2DDX1
KDM5DENSG00000012817.111713.066601333.073600.361703.660202.59910HepG2DDX24
KDM5DENSG00000012817.112509.474101426.208300.8151011.170809.99300HepG2DDX3X
KDM5DENSG00000012817.111782.957201225.274900.541104.461203.69190HepG2DDX6
KDM5DENSG00000012817.111996.238601447.418000.463706.246005.30650HepG2DKC1
KDM5DENSG00000012817.111858.843701222.026500.6050016.5963015.12990HepG2DNAJC2
KDM5DENSG00000012817.112168.568801177.755000.8806012.6723011.46410HepG2EIF2S1
KDM5DENSG00000012817.111701.154401005.364100.758709.544507.96450HepG2EIF3D
KDM5DENSG00000012817.112372.475701267.308600.904509.413108.18260HepG2EIF4B
KDM5DENSG00000012817.112367.981201815.680600.383006.614605.42130HepG2EIF4G1
KDM5DENSG00000012817.113007.638402469.821300.284104.053303.34990HepG2ETF1
KDM5DENSG00000012817.112176.748201563.687600.477103.474902.61910HepG2FIP1L1
KDM5DENSG00000012817.111694.18010898.079000.9156016.3716014.53970HepG2FUBP3
KDM5DENSG00000012817.111870.982201313.345500.510404.758103.86670HepG2FXR1
KDM5DENSG00000012817.112974.097601218.219301.2876025.0879023.15520HepG2G3BP1
KDM5DENSG00000012817.111722.083901293.428200.412903.335402.34940HepG2G3BP2
KDM5DENSG00000012817.111248.33350895.133700.479703.942802.85930HepG2GEMIN5
KDM5DENSG00000012817.111857.340701354.931400.454903.644602.91840HepG2GPKOW
KDM5DENSG00000012817.112085.200901425.121400.549002.972501.53810HepG2HLTF
KDM5DENSG00000012817.112109.320901244.757900.7608012.6752011.45700HepG2HNRNPA1
KDM5DENSG00000012817.112036.858301691.387600.268003.330302.31730HepG2HNRNPA2B1
KDM5DENSG00000012817.111843.212401415.295500.381005.169904.22780HepG2HNRNPF
KDM5DENSG00000012817.112317.733001233.793700.9095015.8416014.31040HepG2HNRNPK
KDM5DENSG00000012817.111606.387001293.033100.313002.169301.60560HepG2HNRNPLL
KDM5DENSG00000012817.111752.764601238.257300.501204.498003.65530HepG2IGF2BP2
KDM5DENSG00000012817.111809.430401162.196000.638602.345401.44660HepG2IGF2BP3
KDM5DENSG00000012817.111613.178801404.926700.199302.235801.56850HepG2ILF2
KDM5DENSG00000012817.111434.320201942.72250-0.437702.962701.72250HepG2KHDRBS1
KDM5DENSG00000012817.111752.306701245.542600.492403.382802.25900HepG2KHSRP
KDM5DENSG00000012817.111741.898001382.898200.332905.549904.12120HepG2KIF1C
KDM5DENSG00000012817.112067.122501318.655900.648504.625003.35220HepG2MTPAP
KDM5DENSG00000012817.112042.409101352.221200.594805.900004.99270HepG2NCBP2
KDM5DENSG00000012817.111411.223601146.498000.299602.104101.44800HepG2NSUN2
KDM5DENSG00000012817.111048.143001863.63950-0.830305.886704.55770HepG2PABPC1
KDM5DENSG00000012817.112246.293901204.124300.8995013.0565011.51760HepG2PABPC4
KDM5DENSG00000012817.111890.402301218.810400.6331014.7741013.55280HepG2PCBP1
KDM5DENSG00000012817.111068.071501250.68970-0.227702.079601.40050HepG2PRPF4
KDM5DENSG00000012817.111311.62440968.940900.436803.700002.78210HepG2PRPF8
KDM5DENSG00000012817.112311.227801240.212900.8980029.4034027.99460HepG2PTBP1
KDM5DENSG00000012817.112367.729401742.066800.442601.946401.43410HepG2PUF60
KDM5DENSG00000012817.112420.879501849.285700.388508.977008.03870HepG2PUM1
KDM5DENSG00000012817.112523.086301847.931900.449206.459305.45020HepG2PUM2
KDM5DENSG00000012817.113526.400501540.990901.1942046.4534044.56230HepG2PUS1
KDM5DENSG00000012817.112241.996401343.122000.7391016.0208014.69610HepG2QKI
KDM5DENSG00000012817.112242.834201720.235000.382604.743203.65700HepG2RBM15
KDM5DENSG00000012817.112691.599702064.284900.382705.470004.80350HepG2RBM22
KDM5DENSG00000012817.111704.849901218.991900.483905.831404.88420HepG2RBM25
KDM5DENSG00000012817.111991.405701380.214800.5288010.239809.32020HepG2NELFE
KDM5DENSG00000012817.111909.737301285.524400.5709012.0358010.88750HepG2RECQL
KDM5DENSG00000012817.111849.268901460.418300.340502.484401.72400HepG2RPS2
KDM5DENSG00000012817.11912.205701279.86580-0.488604.638603.74360HepG2SF3B1
KDM5DENSG00000012817.111249.573201428.40470-0.193001.970201.41250HepG2SMN1
KDM5DENSG00000012817.111979.368301385.000000.515103.529702.43350HepG2SMNDC1
KDM5DENSG00000012817.112230.939301347.724300.7270020.9248019.88080HepG2SRSF1
KDM5DENSG00000012817.112302.248301377.087600.741307.607405.87570HepG2SRSF3
KDM5DENSG00000012817.112001.796501720.043000.218802.429801.83860HepG2SRSF5
KDM5DENSG00000012817.111852.980001390.534400.414104.519903.66310HepG2SRSF7
KDM5DENSG00000012817.111297.420301096.463000.242702.545202.01060HepG2SRSF9
KDM5DENSG00000012817.113675.009702024.191000.8603028.5133027.25650HepG2SSB
KDM5DENSG00000012817.112487.058001956.157800.346306.607705.71910HepG2SUCLG1
KDM5DENSG00000012817.111894.871701211.443500.6453012.6612011.59250HepG2TAF15
KDM5DENSG00000012817.111610.485301260.222200.353702.844702.11170HepG2TARDBP
KDM5DENSG00000012817.111737.057501113.091700.6420010.247308.65940HepG2TIA1
KDM5DENSG00000012817.111153.760601348.40170-0.224902.176801.66460HepG2TRIM56
KDM5DENSG00000012817.111650.059401337.396000.303001.911201.37860HepG2U2AF1
KDM5DENSG00000012817.111229.89890738.536200.735708.773407.41670HepG2UCHL5
KDM5DENSG00000012817.112021.448601575.448900.359506.048605.08160HepG2UPF1
KDM5DENSG00000012817.111997.315101619.354400.302503.809102.59920HepG2UTP18
KDM5DENSG00000012817.112000.030701521.036700.394906.707205.84320HepG2UTP3
KDM5DENSG00000012817.111537.455301230.605700.321102.453501.76670HepG2XRN2
KDM5DENSG00000012817.113047.967401732.694700.8147038.1457036.72380HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KDM5D is not available on ENCORE database.





11 RBPs can affect the splicing of KDM5D :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKDM5DENSG00000012817.11chrY-218721002187214621871336218716952187226121872492-0.583000.000200.05504excludedHepG2EFTUD2
SEKDM5DENSG00000012817.11chrY-219014132190154821897506218976362190320321903374-0.176000.002920.08734excludedHepG2HNRNPC
A3SSKDM5DENSG00000012817.11chrY-2187133621872146218713362187169521872261218723580.355000.000330.08312longerHepG2QKI
A3SSKDM5DENSG00000012817.11chrY-2186832621868526218683262186849421868679218687490.183000.001490.09680longerHepG2SF3A3
A3SSKDM5DENSG00000012817.11chrY-2187133621872146218713362187146421872261218723580.458000.000000.00269longerHepG2DDX59
A3SSKDM5DENSG00000012817.11chrY-2187133621872146218713362187169521872261218723580.406000.000040.01318longerHepG2PTBP1
A3SSKDM5DENSG00000012817.11chrY-2187133621872146218713362187146421872261218723580.458000.000040.02122longerHepG2FTO
A3SSKDM5DENSG00000012817.11chrY-2187133621872146218713362187169521872261218723580.355000.000260.03910longerHepG2PCBP1
RIKDM5DENSG00000012817.11chrY-2186832621868749218683262186849421868679218687490.248000.001680.02059includedHepG2SF3A3
RIKDM5DENSG00000012817.11chrY-218683262186874921868326218685262186867921868749-0.093000.006320.05576excludedHepG2U2AF1
RIKDM5DENSG00000012817.11chrY-2186832621868749218683262186852621868679218687490.113000.000260.00417includedHepG2RBM22
RIKDM5DENSG00000012817.11chrY-218683262186874921868326218684942186867921868749-0.174000.002260.09628excludedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KDM5D is not avaliable on ENCORE database.