ITGA5

General Information

Gene Name : ITGA5
Gene ID : ENSG00000161638.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ITGA5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ITGA5	ENSG00000161638.10	0.83	0.61	0.72	ENCSR000AEF
HepG2	ITGA5	ENSG00000161638.10	0.21	0.08	0.14	ENCSR985KAT
K562	ITGA5	ENSG00000161638.10	59.82	55.22	57.52	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ITGA5 is not avaliable on ENCORE database.

Proteins bound to RNA

ITGA5 RNA is bound by 33 proteins.

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eCLIP assay for ITGA5 is not avaliable on ENCORE database.

33 proteins are bound to ITGA5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	54789469	54789566	-	3'-UTR,intron-Distal	4.99067	37.13109	K562	UPF1
chr12	54801617	54801747	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.33994	31.22265	K562	SF3B4
chr12	54789760	54789856	-	3'-UTR,intron-Distal	5.04855	20.74309	K562	UPF1
chr12	54798138	54798222	-	CDS,intron-Distal,intron-Proximal	4.50836	19.20078	K562	EFTUD2
chr12	54801614	54801661	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.27990	19.00126	K562	LIN28B
chr12	54789420	54789468	-	3'-UTR,intron-Distal	4.51691	18.86493	K562	UPF1
chr12	54795784	54795873	-	CDS,intron-Distal,intron-Proximal	4.48529	18.77309	K562	DDX24
chr12	54791072	54791150	-	CDS,intron-Distal,intron-Proximal	5.02539	18.07708	K562	AQR
chr12	54789083	54789155	-	3'-UTR,intron-Distal	4.72443	17.24752	K562	UPF1
chr12	54803531	54803623	-	intron-Distal	4.92419	16.66031	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 139 entries

eCLIP assay for ITGA5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ITGA5 is not available on ENCORE database.
135 RBPs can affect the levels of ITGA5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ITGA5 is not available on ENCORE database.

135 RBPs can affect the gene expression of ITGA5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ITGA5	ENSG00000161638.6	376.06210	2.50270	7.23130	80.38580	77.84810	HepG2	DDX6
ITGA5	ENSG00000161638.6	333.11990	3.04290	6.77440	62.57290	60.58700	HepG2	AKAP1
ITGA5	ENSG00000161638.6	6981.76100	2938.35260	1.24850	37.86410	35.81940	K562	EIF2S2
ITGA5	ENSG00000161638.6	274.01690	38.37370	2.83600	36.21570	34.02590	HepG2	PUM2
ITGA5	ENSG00000161638.6	7495.61670	3575.61710	1.06780	33.60690	31.16840	K562	SF3A3
ITGA5	ENSG00000161638.6	1239.22930	2714.85130	-1.13140	29.16440	26.43720	K562	SAFB
ITGA5	ENSG00000161638.6	5031.32620	1779.75550	1.49920	28.98110	26.34730	K562	BOP1
ITGA5	ENSG00000161638.6	110.29990	3.44520	5.00060	24.25710	23.15880	HepG2	SRSF1
ITGA5	ENSG00000161638.6	1599.41560	3047.12180	-0.92990	24.51160	22.31680	K562	POLR2G
ITGA5	ENSG00000161638.6	1617.29380	3056.25110	-0.91820	24.14370	21.87790	K562	SYNCRIP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 156 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ITGA5 is not available on ENCORE database.

10 RBPs can affect the splicing of ITGA5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
A3SS	ITGA5	ENSG00000161638.6	chr12	-	54798213	54798404	54798213	54798259	54798486	54798678	0.13100	0.00001	longer	K562	AQR
A3SS	ITGA5	ENSG00000161638.6	chr12	-	54801432	54801502	54801432	54801476	54801615	54801660	0.22200	0.00000	longer	K562	AQR
A3SS	ITGA5	ENSG00000161638.6	chr12	-	54796766	54796883	54796766	54796834	54796970	54797194	0.17300	0.00000	longer	K562	AQR
A3SS	ITGA5	ENSG00000161638.6	chr12	-	54801893	54802069	54801893	54802019	54802539	54802585	0.11400	0.00000	longer	K562	AQR
A3SS	ITGA5	ENSG00000161638.6	chr12	-	54799653	54799867	54799653	54799710	54801432	54801502	0.08900	0.00000	longer	K562	AQR
A3SS	ITGA5	ENSG00000161638.6	chr12	-	54793647	54793815	54793647	54793731	54794629	54794779	0.25600	0.00000	longer	K562	AQR
A3SS	ITGA5	ENSG00000161638.6	chr12	-	54795368	54795476	54795368	54795449	54795559	54795639	0.05800	0.00004	longer	K562	AQR
A3SS	ITGA5	ENSG00000161638.6	chr12	-	54801615	54801803	54801615	54801660	54801893	54802019	0.05500	0.00037	longer	K562	PUS1
RI	ITGA5	ENSG00000161638.6	chr12	-	54796970	54797563	54796970	54797108	54797408	54797563	0.08900	0.00000	included	K562	PUS1
RI	ITGA5	ENSG00000161638.6	chr12	-	54798213	54798678	54798213	54798259	54798486	54798678	0.19000	0.00000	included	K562	PUS1

Showing 1 to 10 of 33 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ITGA5

General Information

Functions

Localization

Domains (AlphaFold: ITGA5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ITGA5 is not avaliable on ENCORE database.

33 proteins are bound to ITGA5 RNA:

eCLIP assay for ITGA5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ITGA5 is not available on ENCORE database.

135 RBPs can affect the gene expression of ITGA5 :

The Knockdown/knockout RNA-Seq assay for ITGA5 is not available on ENCORE database.

10 RBPs can affect the splicing of ITGA5 :

The Knockdown/knockout RNA-Seq assay for ITGA5 is not avaliable on ENCORE database.