GTPBP3

General Information

Gene Name : GTPBP3
Gene ID : ENSG00000130299.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GTPBP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GTPBP3	ENSG00000130299.16	3.84	5.52	4.68	ENCSR000AEF
HepG2	GTPBP3	ENSG00000130299.16	31.14	12.31	21.73	ENCSR985KAT
K562	GTPBP3	ENSG00000130299.16	25.55	12.81	19.18	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GTPBP3 is not avaliable on ENCORE database.

Proteins bound to RNA

GTPBP3 RNA is bound by 23 proteins.

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eCLIP assay for GTPBP3 is not avaliable on ENCORE database.

23 proteins are bound to GTPBP3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	17452861	17452992	+	3'-UTR,intron-Distal,intron-Proximal	7.26918	400.00000	HepG2	PCBP2
chr19	17452861	17452971	+	3'-UTR,intron-Distal,intron-Proximal	6.14804	61.45748	HepG2	HNRNPK
chr19	17451316	17451391	+	intron-Distal	5.56679	44.48188	HepG2	PCBP2
chr19	17451611	17451705	+	intron-Distal	5.86147	38.92135	HepG2	PCBP2
chr19	17452904	17453012	+	3'-UTR,intron-Proximal	4.05719	38.63015	K562	ILF3
chr19	17451518	17451591	+	intron-Distal	6.18473	32.38746	HepG2	PCBP2
chr19	17451707	17451775	+	intron-Distal,intron-Proximal	5.53806	29.14651	HepG2	PCBP2
chr19	17452853	17452961	+	3'-UTR,intron-Distal,intron-Proximal	4.39224	26.26388	HepG2	DDX59
chr19	17451267	17451316	+	intron-Distal	5.73141	23.28718	HepG2	PCBP2
chr19	17449869	17449978	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.04777	18.07757	K562	BUD13
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 97 entries

eCLIP assay for GTPBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GTPBP3 is not available on ENCORE database.
84 RBPs can affect the levels of GTPBP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GTPBP3 is not available on ENCORE database.

84 RBPs can affect the gene expression of GTPBP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GTPBP3	ENSG00000130299.12	288.89480	736.96650	-1.35110	34.00890	32.64070	HepG2	ZNF622
GTPBP3	ENSG00000130299.12	692.24520	1298.85060	-0.90790	11.97860	10.88310	K562	AQR
GTPBP3	ENSG00000130299.12	699.33930	396.06650	0.82010	10.08370	8.40910	K562	TIA1
GTPBP3	ENSG00000130299.12	619.05180	388.91090	0.67050	8.16960	7.21750	HepG2	PCBP1
GTPBP3	ENSG00000130299.12	155.54820	331.88100	-1.09330	8.53720	7.20350	HepG2	PRPF8
GTPBP3	ENSG00000130299.12	719.08710	410.59300	0.80840	8.52350	7.19470	K562	TARDBP
GTPBP3	ENSG00000130299.12	536.29010	1016.91270	-0.92310	7.23250	6.52780	HepG2	SRFBP1
GTPBP3	ENSG00000130299.12	1243.68290	1785.38820	-0.52160	8.06130	6.43080	K562	CELF1
GTPBP3	ENSG00000130299.12	792.36290	1206.77320	-0.60690	7.30420	6.02950	K562	SF3A3
GTPBP3	ENSG00000130299.12	686.17620	425.95270	0.68780	7.22220	5.83740	K562	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 93 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GTPBP3 is not available on ENCORE database.

16 RBPs can affect the splicing of GTPBP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	GTPBP3	ENSG00000130299.12	chr19	+	17448707	17449064	17448816	17449064	17448367	17448473	-0.33000	0.00000	0.00006	shorter	K562	AGGF1
A3SS	GTPBP3	ENSG00000130299.12	chr19	+	17448707	17449064	17448816	17449064	17448367	17448473	-0.31000	0.00000	0.00028	shorter	K562	AKAP8L
A3SS	GTPBP3	ENSG00000130299.12	chr19	+	17450172	17450408	17450242	17450408	17449887	17450075	0.10200	0.00000	0.00000	longer	K562	AQR
RI	GTPBP3	ENSG00000130299.12	chr19	+	17449762	17450075	17449762	17449835	17449931	17450075	0.35800	0.00000	0.00002	included	HepG2	IGF2BP3
RI	GTPBP3	ENSG00000130299.12	chr19	+	17449762	17450075	17449762	17449835	17449931	17450075	0.23700	0.00000	0.00016	included	HepG2	G3BP1
RI	GTPBP3	ENSG00000130299.12	chr19	+	17449762	17450075	17449762	17449835	17449931	17450075	0.22700	0.00000	0.00010	included	HepG2	KHSRP
RI	GTPBP3	ENSG00000130299.12	chr19	+	17449762	17450075	17449762	17449835	17449931	17450075	0.30500	0.00000	0.00000	included	HepG2	RBM22
A3SS	GTPBP3	ENSG00000130299.12	chr19	+	17448707	17449064	17448816	17449064	17448367	17448473	-0.39400	0.00007	0.05665	shorter	K562	APOBEC3C
RI	GTPBP3	ENSG00000130299.12	chr19	+	17448816	17449260	17448816	17449064	17449173	17449260	0.32000	0.00008	0.00167	included	HepG2	SF3A3
RI	GTPBP3	ENSG00000130299.12	chr19	+	17449762	17450075	17449762	17449835	17449931	17450075	-0.27200	0.00019	0.02183	excluded	K562	NONO

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GTPBP3

General Information

Functions

Localization

Domains (AlphaFold: GTPBP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GTPBP3 is not avaliable on ENCORE database.

23 proteins are bound to GTPBP3 RNA:

eCLIP assay for GTPBP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GTPBP3 is not available on ENCORE database.

84 RBPs can affect the gene expression of GTPBP3 :

The Knockdown/knockout RNA-Seq assay for GTPBP3 is not available on ENCORE database.

16 RBPs can affect the splicing of GTPBP3 :

The Knockdown/knockout RNA-Seq assay for GTPBP3 is not avaliable on ENCORE database.